FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1728, 236 aa 1>>>pF1KE1728 236 - 236 aa - 236 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6247+/-0.000833; mu= 17.6221+/- 0.050 mean_var=60.4891+/-12.344, 0's: 0 Z-trim(106.6): 17 B-trim: 97 in 1/50 Lambda= 0.164906 statistics sampled from 9068 (9075) to 9068 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.279), width: 16 Scan time: 1.940 The best scores are: opt bits E(32554) CCDS11186.1 PEMT gene_id:10400|Hs108|chr17 ( 236) 1571 382.0 1.9e-106 CCDS58520.1 PEMT gene_id:10400|Hs108|chr17 ( 232) 1311 320.1 7.6e-88 CCDS11187.1 PEMT gene_id:10400|Hs108|chr17 ( 199) 1303 318.2 2.5e-87 >>CCDS11186.1 PEMT gene_id:10400|Hs108|chr17 (236 aa) initn: 1571 init1: 1571 opt: 1571 Z-score: 2024.7 bits: 382.0 E(32554): 1.9e-106 Smith-Waterman score: 1571; 99.6% identity (100.0% similar) in 236 aa overlap (1-236:1-236) 10 20 30 40 50 60 pF1KE1 MKRSGNPGAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MKRSGNPGAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITIT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSITILLLNFLRSHCFTQAMLSQPRMES ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: CCDS11 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSVTILLLNFLRSHCFTQAMLSQPRMES 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 WGSTANYLGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 WGSTANYLGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS 190 200 210 220 230 >>CCDS58520.1 PEMT gene_id:10400|Hs108|chr17 (232 aa) initn: 1338 init1: 1305 opt: 1311 Z-score: 1690.6 bits: 320.1 E(32554): 7.6e-88 Smith-Waterman score: 1311; 97.5% identity (99.0% similar) in 199 aa overlap (1-199:1-198) 10 20 30 40 50 60 pF1KE1 MKRSGNPGAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MKRSGNPGAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITIT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSITILLLNFLRSHCFTQAMLSQPRMES ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: CCDS58 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSVTILLLNFLRSHCFTQAMLSQPRMES 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 WGSTANYLGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS ::::::::::::. : :.: CCDS58 WGSTANYLGWAIIPA-PAGAVGSEARQPHGPAPDGAGGPHLHSGSPIRRALHR 190 200 210 220 230 >>CCDS11187.1 PEMT gene_id:10400|Hs108|chr17 (199 aa) initn: 1303 init1: 1303 opt: 1303 Z-score: 1681.2 bits: 318.2 E(32554): 2.5e-87 Smith-Waterman score: 1303; 99.5% identity (100.0% similar) in 199 aa overlap (38-236:1-199) 10 20 30 40 50 60 pF1KE1 GAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITITFNPLYWN :::::::::::::::::::::::::::::: CCDS11 MTRLLGYVDPLDPSFVAAVITITFNPLYWN 10 20 30 70 80 90 100 110 120 pF1KE1 VVARWEHKTRKLSRAFGSPYLACYSLSITILLLNFLRSHCFTQAMLSQPRMESLDTPAAY :::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::: CCDS11 VVARWEHKTRKLSRAFGSPYLACYSLSVTILLLNFLRSHCFTQAMLSQPRMESLDTPAAY 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE1 SLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMYWGSTANY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMYWGSTANY 100 110 120 130 140 150 190 200 210 220 230 pF1KE1 LGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS 160 170 180 190 236 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:28:24 2016 done: Mon Nov 7 15:28:24 2016 Total Scan time: 1.940 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]