Result of FASTA (omim) for
pFN21AE6613
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6613, 252 aa
1>>>pF1KE6613 252 - 252 aa - 252 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7808+/-0.000384; mu= 16.8390+/- 0.024
mean_var=58.3933+/-12.154, 0's: 0 Z-trim(111.8): 29 B-trim: 435 in 1/51
Lambda= 0.167839
statistics sampled from 20454 (20468) to 20454 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.24), width: 16
Scan time: 6.410
The best scores are: opt bits E(85289)
XP_016880842 (OMIM: 280000,605947) PREDICTED: N-ac ( 252) 1686 416.6 2.1e-116
XP_016880841 (OMIM: 280000,605947) PREDICTED: N-ac ( 252) 1686 416.6 2.1e-116
NP_004269 (OMIM: 280000,605947) N-acetylglucosamin ( 252) 1686 416.6 2.1e-116
XP_016880845 (OMIM: 280000,605947) PREDICTED: N-ac ( 194) 1207 300.6 1.4e-81
XP_016880838 (OMIM: 280000,605947) PREDICTED: N-ac ( 271) 1196 298.0 1.2e-80
XP_016880839 (OMIM: 280000,605947) PREDICTED: N-ac ( 271) 1196 298.0 1.2e-80
XP_016880840 (OMIM: 280000,605947) PREDICTED: N-ac ( 271) 1196 298.0 1.2e-80
XP_011522382 (OMIM: 280000,605947) PREDICTED: N-ac ( 183) 1150 286.7 1.9e-77
XP_016880844 (OMIM: 280000,605947) PREDICTED: N-ac ( 244) 1134 282.9 3.5e-76
XP_016880843 (OMIM: 280000,605947) PREDICTED: N-ac ( 244) 1134 282.9 3.5e-76
>>XP_016880842 (OMIM: 280000,605947) PREDICTED: N-acetyl (252 aa)
initn: 1686 init1: 1686 opt: 1686 Z-score: 2210.9 bits: 416.6 E(85289): 2.1e-116
Smith-Waterman score: 1686; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)
10 20 30 40 50 60
pF1KE6 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF
190 200 210 220 230 240
250
pF1KE6 SRYMRINSLSFL
::::::::::::
XP_016 SRYMRINSLSFL
250
>>XP_016880841 (OMIM: 280000,605947) PREDICTED: N-acetyl (252 aa)
initn: 1686 init1: 1686 opt: 1686 Z-score: 2210.9 bits: 416.6 E(85289): 2.1e-116
Smith-Waterman score: 1686; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)
10 20 30 40 50 60
pF1KE6 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF
190 200 210 220 230 240
250
pF1KE6 SRYMRINSLSFL
::::::::::::
XP_016 SRYMRINSLSFL
250
>>NP_004269 (OMIM: 280000,605947) N-acetylglucosaminyl-p (252 aa)
initn: 1686 init1: 1686 opt: 1686 Z-score: 2210.9 bits: 416.6 E(85289): 2.1e-116
Smith-Waterman score: 1686; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)
10 20 30 40 50 60
pF1KE6 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF
190 200 210 220 230 240
250
pF1KE6 SRYMRINSLSFL
::::::::::::
NP_004 SRYMRINSLSFL
250
>>XP_016880845 (OMIM: 280000,605947) PREDICTED: N-acetyl (194 aa)
initn: 1203 init1: 1203 opt: 1207 Z-score: 1585.7 bits: 300.6 E(85289): 1.4e-81
Smith-Waterman score: 1207; 98.9% identity (98.9% similar) in 180 aa overlap (1-178:1-180)
10 20 30 40 50 60
pF1KE6 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
70 80 90 100 110 120
130 140 150 160 170
pF1KE6 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKG--CS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
XP_016 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGKACS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE6 VLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYI
XP_016 FCKGPQDTVPLRNL
190
>>XP_016880838 (OMIM: 280000,605947) PREDICTED: N-acetyl (271 aa)
initn: 1195 init1: 1195 opt: 1196 Z-score: 1569.2 bits: 298.0 E(85289): 1.2e-80
Smith-Waterman score: 1196; 98.9% identity (99.4% similar) in 178 aa overlap (1-177:1-178)
10 20 30 40 50 60
pF1KE6 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
70 80 90 100 110 120
130 140 150 160 170
pF1KE6 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPK-GCSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::: .:
XP_016 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKESCPQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE6 LTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYII
XP_016 PSRGSGWGGRHTLPDSPQGTWQVVSTSKCLPAGPPLDEWGGQVCPSTCLAFSQGGCFTPL
190 200 210 220 230 240
>>XP_016880839 (OMIM: 280000,605947) PREDICTED: N-acetyl (271 aa)
initn: 1195 init1: 1195 opt: 1196 Z-score: 1569.2 bits: 298.0 E(85289): 1.2e-80
Smith-Waterman score: 1196; 98.9% identity (99.4% similar) in 178 aa overlap (1-177:1-178)
10 20 30 40 50 60
pF1KE6 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
70 80 90 100 110 120
130 140 150 160 170
pF1KE6 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPK-GCSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::: .:
XP_016 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKESCPQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE6 LTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYII
XP_016 PSRGSGWGGRHTLPDSPQGTWQVVSTSKCLPAGPPLDEWGGQVCPSTCLAFSQGGCFTPL
190 200 210 220 230 240
>>XP_016880840 (OMIM: 280000,605947) PREDICTED: N-acetyl (271 aa)
initn: 1195 init1: 1195 opt: 1196 Z-score: 1569.2 bits: 298.0 E(85289): 1.2e-80
Smith-Waterman score: 1196; 98.9% identity (99.4% similar) in 178 aa overlap (1-177:1-178)
10 20 30 40 50 60
pF1KE6 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
70 80 90 100 110 120
130 140 150 160 170
pF1KE6 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPK-GCSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::: .:
XP_016 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKESCPQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE6 LTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYII
XP_016 PSRGSGWGGRHTLPDSPQGTWQVVSTSKCLPAGPPLDEWGGQVCPSTCLAFSQGGCFTPL
190 200 210 220 230 240
>>XP_011522382 (OMIM: 280000,605947) PREDICTED: N-acetyl (183 aa)
initn: 1172 init1: 1135 opt: 1150 Z-score: 1511.4 bits: 286.7 E(85289): 1.9e-77
Smith-Waterman score: 1150; 96.0% identity (97.2% similar) in 177 aa overlap (1-177:1-175)
10 20 30 40 50 60
pF1KE6 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL
::::::::::::::::::::::::::::::::::::::::::::: : ::.. : :
XP_011 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRKL--EGQICKPCGTG
130 140 150 160 170
190 200 210 220 230 240
pF1KE6 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF
XP_011 QDFKE
180
>>XP_016880844 (OMIM: 280000,605947) PREDICTED: N-acetyl (244 aa)
initn: 1171 init1: 1134 opt: 1134 Z-score: 1488.7 bits: 282.9 E(85289): 3.5e-76
Smith-Waterman score: 1134; 99.4% identity (100.0% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KE6 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL
:::::::::::::::::::::::::::::::::::::::::::::.:
XP_016 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRVLCAHASVCECAAQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF
XP_016 HLPSGSALVSASYAGCPLRAQQQRSGTGQESHVLPPQPAPLVPPPLHYLLPVHENQLTEL
190 200 210 220 230 240
>>XP_016880843 (OMIM: 280000,605947) PREDICTED: N-acetyl (244 aa)
initn: 1171 init1: 1134 opt: 1134 Z-score: 1488.7 bits: 282.9 E(85289): 3.5e-76
Smith-Waterman score: 1134; 99.4% identity (100.0% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KE6 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL
:::::::::::::::::::::::::::::::::::::::::::::.:
XP_016 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRVLCAHASVCECAAQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF
XP_016 HLPSGSALVSASYAGCPLRAQQQRSGTGQESHVLPPQPAPLVPPPLHYLLPVHENQLTEL
190 200 210 220 230 240
252 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:46:41 2016 done: Tue Nov 8 14:46:42 2016
Total Scan time: 6.410 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]