FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6613, 252 aa
  1>>>pF1KE6613 252 - 252 aa - 252 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1419+/-0.000825; mu= 14.6224+/- 0.049
 mean_var=54.1590+/-10.964, 0's: 0 Z-trim(105.4): 24  B-trim: 0 in 0/48
 Lambda= 0.174277
 statistics sampled from 8395 (8397) to 8395 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.258), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS11176.1 PIGL gene_id:9487|Hs108|chr17          ( 252) 1686 431.8 2.1e-121


>>CCDS11176.1 PIGL gene_id:9487|Hs108|chr17               (252 aa)
 initn: 1686 init1: 1686 opt: 1686  Z-score: 2293.0  bits: 431.8 E(32554): 2.1e-121
Smith-Waterman score: 1686; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KE6 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF
              190       200       210       220       230       240

              250  
pF1KE6 SRYMRINSLSFL
       ::::::::::::
CCDS11 SRYMRINSLSFL
              250  




252 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:46:41 2016 done: Tue Nov  8 14:46:41 2016
 Total Scan time:  1.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]