FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4335, 345 aa 1>>>pF1KE4335 345 - 345 aa - 345 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.7235+/-0.000991; mu= 2.5422+/- 0.059 mean_var=255.1597+/-51.970, 0's: 0 Z-trim(113.2): 18 B-trim: 111 in 1/53 Lambda= 0.080291 statistics sampled from 13866 (13873) to 13866 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.426), width: 16 Scan time: 3.190 The best scores are: opt bits E(32554) CCDS11143.1 NDEL1 gene_id:81565|Hs108|chr17 ( 345) 2207 268.4 6.3e-72 CCDS32564.1 NDEL1 gene_id:81565|Hs108|chr17 ( 328) 2004 244.8 7.3e-65 CCDS82070.1 NDEL1 gene_id:81565|Hs108|chr17 ( 269) 1665 205.5 4.2e-53 CCDS10564.1 NDE1 gene_id:54820|Hs108|chr16 ( 335) 1133 144.0 1.7e-34 >>CCDS11143.1 NDEL1 gene_id:81565|Hs108|chr17 (345 aa) initn: 2207 init1: 2207 opt: 2207 Z-score: 1404.8 bits: 268.4 E(32554): 6.3e-72 Smith-Waterman score: 2207; 99.7% identity (99.7% similar) in 345 aa overlap (1-345:1-345) 10 20 30 40 50 60 pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG 250 260 270 280 290 300 310 320 330 340 pF1KE4 TKFSRSGHTSFFDKGAVNGFDTAPPPPGLGSSRPSSAPGMLPLSV ::::::::::::::::::::: ::::::::::::::::::::::: CCDS11 TKFSRSGHTSFFDKGAVNGFDPAPPPPGLGSSRPSSAPGMLPLSV 310 320 330 340 >>CCDS32564.1 NDEL1 gene_id:81565|Hs108|chr17 (328 aa) initn: 2004 init1: 2004 opt: 2004 Z-score: 1278.0 bits: 244.8 E(32554): 7.3e-65 Smith-Waterman score: 2004; 100.0% identity (100.0% similar) in 315 aa overlap (1-315:1-315) 10 20 30 40 50 60 pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG 250 260 270 280 290 300 310 320 330 340 pF1KE4 TKFSRSGHTSFFDKGAVNGFDTAPPPPGLGSSRPSSAPGMLPLSV ::::::::::::::: CCDS32 TKFSRSGHTSFFDKGQEKVIFPTLFMGQ 310 320 >>CCDS82070.1 NDEL1 gene_id:81565|Hs108|chr17 (269 aa) initn: 1665 init1: 1665 opt: 1665 Z-score: 1066.8 bits: 205.5 E(32554): 4.2e-53 Smith-Waterman score: 1665; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264) 10 20 30 40 50 60 pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG :::::::::::::::::::::::: CCDS82 TSPLTPSARISALNIVGDLLRKVGGSKRL 250 260 >>CCDS10564.1 NDE1 gene_id:54820|Hs108|chr16 (335 aa) initn: 1160 init1: 836 opt: 1133 Z-score: 732.6 bits: 144.0 E(32554): 1.7e-34 Smith-Waterman score: 1133; 60.0% identity (81.3% similar) in 315 aa overlap (9-315:8-316) 10 20 30 40 50 60 pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ ::: .::. :::.:.. ::: .....:: :::::::: :::::.:: : : CCDS10 MEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQEGSREYEAELETQLQQIET 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ ::::: ..:.::..:.:..:::.: :....:.:.:.:::::.::.:::.::.::.::::: CCDS10 RNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLAQTKAIKDQLQKYIRELEQ 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE4 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE :::::::::::::.:::::::::::::::::::::::::::.:: ::::::::::::::: CCDS10 ANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLESVQRLKDEARDLRQE 120 130 140 150 160 170 190 200 210 220 230 pF1KE4 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVG-KGTENTFPSPKAIPNGF :::...: : : ::: .. :. :.::::. :.:.::.. .: ... .: .. :. CCDS10 LAVQQKQ-EKPRTPMPSS--VEAERTDTAVQATGSVPSTPIAHRGPSSSLNTPGSFRRGL 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE4 ----GTSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGV : .::::.::::::::::::::::::::::::.:::.. ::. .. :. : CCDS10 DDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQSPNRT---GGPASGR 240 250 260 270 280 290 300 310 320 330 340 pF1KE4 LNGN---GTKFSRSGHTSFFDKGAVNGFDTAPPPPGLGSSRPSSAPGMLPLSV . : : . : . . ::: CCDS10 SSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC 300 310 320 330 345 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:13:51 2016 done: Sun Nov 6 02:13:51 2016 Total Scan time: 3.190 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]