FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6632, 247 aa 1>>>pF1KE6632 247 - 247 aa - 247 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9348+/-0.000871; mu= 16.0071+/- 0.052 mean_var=56.5899+/-11.834, 0's: 0 Z-trim(105.4): 23 B-trim: 598 in 1/47 Lambda= 0.170492 statistics sampled from 8382 (8395) to 8382 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.258), width: 16 Scan time: 1.500 The best scores are: opt bits E(32554) CCDS11115.1 MPDU1 gene_id:9526|Hs108|chr17 ( 247) 1589 398.9 1.6e-111 CCDS82054.1 MPDU1 gene_id:9526|Hs108|chr17 ( 192) 850 217.1 7e-57 >>CCDS11115.1 MPDU1 gene_id:9526|Hs108|chr17 (247 aa) initn: 1589 init1: 1589 opt: 1589 Z-score: 2115.4 bits: 398.9 E(32554): 1.6e-111 Smith-Waterman score: 1589; 99.6% identity (100.0% similar) in 247 aa overlap (1-247:1-247) 10 20 30 40 50 60 pF1KE6 MAAEADGPLKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MAAEADGPLKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 MHYRGQTVKGVAFLACYGLVLLVLLSPLTPLTVVTLLQASNVPAVVVGRLLQAATNYHNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MHYRGQTVKGVAFLACYGLVLLVLLSPLTPLTVVTLLQASNVPAVVVGRLLQAATNYHNG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIATQLLFYWNAKPP ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: CCDS11 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIAAQLLFYWNAKPP 190 200 210 220 230 240 pF1KE6 HKQKKAQ ::::::: CCDS11 HKQKKAQ >>CCDS82054.1 MPDU1 gene_id:9526|Hs108|chr17 (192 aa) initn: 846 init1: 846 opt: 850 Z-score: 1134.7 bits: 217.1 E(32554): 7e-57 Smith-Waterman score: 850; 83.4% identity (87.6% similar) in 169 aa overlap (1-164:1-169) 10 20 30 40 50 60 pF1KE6 MAAEADGPLKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MAAEADGPLKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLV 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 MHYRGQTVKGVAFLA----CYGLVLLVLLS-PLTPLTVVTLLQASNVPAVVVGRLLQAAT ::::::::::.. : : . :: : :..: :::. :. CCDS82 MHYRGQTVKGAGDLPKSRLCGSWEPCWELSFSRQPPTTTTGTQASSQPSQSSCCLGAPWP 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE6 NYHNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIATQLLFYW CCDS82 ESSLPFRKPEIP 190 247 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:57:13 2016 done: Tue Nov 8 14:57:14 2016 Total Scan time: 1.500 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]