FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3754, 249 aa 1>>>pF1KE3754 249 - 249 aa - 249 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4215+/-0.000674; mu= 15.6624+/- 0.041 mean_var=88.0094+/-17.585, 0's: 0 Z-trim(113.0): 6 B-trim: 567 in 1/50 Lambda= 0.136713 statistics sampled from 13691 (13693) to 13691 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.421), width: 16 Scan time: 2.450 The best scores are: opt bits E(32554) CCDS11109.1 TNFSF12 gene_id:8742|Hs108|chr17 ( 249) 1640 332.5 1.7e-91 CCDS11108.1 TNFSF13 gene_id:407977|Hs108|chr17 ( 330) 1094 224.9 5.3e-59 >>CCDS11109.1 TNFSF12 gene_id:8742|Hs108|chr17 (249 aa) initn: 1640 init1: 1640 opt: 1640 Z-score: 1756.3 bits: 332.5 E(32554): 1.7e-91 Smith-Waterman score: 1640; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249) 10 20 30 40 50 60 pF1KE3 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQVHFDEGKAVYLKLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQVHFDEGKAVYLKLD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 LLVDGVLALRCLEEFSATAASSLGPQLRLCQVSGLLALRPGSSLRIRTLPWAHLKAAPFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LLVDGVLALRCLEEFSATAASSLGPQLRLCQVSGLLALRPGSSLRIRTLPWAHLKAAPFL 190 200 210 220 230 240 pF1KE3 TYFGLFQVH ::::::::: CCDS11 TYFGLFQVH >>CCDS11108.1 TNFSF13 gene_id:407977|Hs108|chr17 (330 aa) initn: 1132 init1: 1094 opt: 1094 Z-score: 1172.7 bits: 224.9 E(32554): 5.3e-59 Smith-Waterman score: 1094; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166) 10 20 30 40 50 60 pF1KE3 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQVHFDEGKAVYLKLD :::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQSSDALEAWENGERS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 LLVDGVLALRCLEEFSATAASSLGPQLRLCQVSGLLALRPGSSLRIRTLPWAHLKAAPFL CCDS11 RKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDA 190 200 210 220 230 240 249 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 07:05:57 2016 done: Sun Nov 6 07:05:57 2016 Total Scan time: 2.450 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]