FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9541, 448 aa 1>>>pF1KE9541 448 - 448 aa - 448 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0613+/-0.000664; mu= 15.7171+/- 0.040 mean_var=103.0599+/-20.839, 0's: 0 Z-trim(114.1): 6 B-trim: 878 in 1/52 Lambda= 0.126337 statistics sampled from 14720 (14723) to 14720 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.452), width: 16 Scan time: 3.020 The best scores are: opt bits E(32554) CCDS11066.1 SLC52A1 gene_id:55065|Hs108|chr17 ( 448) 2978 552.8 2.6e-157 CCDS6423.1 SLC52A2 gene_id:79581|Hs108|chr8 ( 445) 2542 473.3 2.2e-133 CCDS13007.1 SLC52A3 gene_id:113278|Hs108|chr20 ( 469) 528 106.2 7.2e-23 >>CCDS11066.1 SLC52A1 gene_id:55065|Hs108|chr17 (448 aa) initn: 2978 init1: 2978 opt: 2978 Z-score: 2937.7 bits: 552.8 E(32554): 2.6e-157 Smith-Waterman score: 2978; 99.6% identity (100.0% similar) in 448 aa overlap (1-448:1-448) 10 20 30 40 50 60 pF1KE9 MAAPTLGRLVLTHLLVALFGMGSWAAVNGIWVELPVVVKDLPEGWSLPSYLSVVVALGNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MAAPTLGRLVLTHLLVALFGMGSWAAVNGIWVELPVVVKDLPEGWSLPSYLSVVVALGNL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 GLLVVTLWRRLAPGKGEQVPIQVVQVLSVVGTALLAPLWHHVAPVAGQLHSVAFLTLALV :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GLLVVTLWRQLAPGKGEQVPIQVVQVLSVVGTALLAPLWHHVAPVAGQLHSVAFLTLALV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 LAMACCTSNVTFLPFLSHLPPPFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPTNGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LAMACCTSNVTFLPFLSHLPPPFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPTNGT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 SGPPLDFPERFPASTFFWALTALLVTSAAAFRGLLLLLPSLPSVTTGGSGPELQLGSPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SGPPLDFPERFPASTFFWALTALLVTSAAAFRGLLLLLPSLPSVTTGGSGPELQLGSPGA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 EEEEKEEEEALPLQEPPSQAAGTIPGPDPEVHQLFSAHGAFLLGLMAFTSAVTNGVLPSV ::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::: CCDS11 EEEEKEEEEALPLQEPPSQAAGTIPGPDPEAHQLFSAHGAFLLGLMAFTSAVTNGVLPSV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE9 QSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLVGLSLLGMLFGAYLMALA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLVGLSLLGMLFGAYLMALA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE9 ILSPCPPLVGTTAGVVLVVLSWVLCLCVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ILSPCPPLVGTTAGVVLVVLSWVLCLCVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL 370 380 390 400 410 420 430 440 pF1KE9 LGAGAMFPPTSIYHVFQSRKDCVDPCGP :::::::::::::::::::::::::::: CCDS11 LGAGAMFPPTSIYHVFQSRKDCVDPCGP 430 440 >>CCDS6423.1 SLC52A2 gene_id:79581|Hs108|chr8 (445 aa) initn: 1412 init1: 1412 opt: 2542 Z-score: 2508.3 bits: 473.3 E(32554): 2.2e-133 Smith-Waterman score: 2542; 86.5% identity (93.9% similar) in 446 aa overlap (1-446:1-443) 10 20 30 40 50 60 pF1KE9 MAAPTLGRLVLTHLLVALFGMGSWAAVNGIWVELPVVVKDLPEGWSLPSYLSVVVALGNL ::::: .: ::::::::::::::::::::::::::::::.::::::::::.::.:::::: CCDS64 MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 GLLVVTLWRRLAPGKGEQVPIQVVQVLSVVGTALLAPLWHHVAPVAGQLHSVAFLTLALV ::::::::::::::: :::::.:::::..::::::: ::::::::::::::::::.::.: CCDS64 GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 LAMACCTSNVTFLPFLSHLPPPFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPTNGT ::.:::.:::::::::::::: :::::::::::::::::::::::::::::::::: ::: CCDS64 LALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPINGT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 SGPPLDFPERFPASTFFWALTALLVTSAAAFRGLLLLLPSLPSVTTGGSGPELQLGSPGA :::::: :::::::::::::::::.:::::.::::::: ::: :: : ::.:.::: CCDS64 PGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGELGSGLQVGAPGA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 EEEEKEEEEALPLQEPPSQAAGTIPGPDPEVHQLFSAHGAFLLGLMAFTSAVTNGVLPSV ::: ::. :::::::::::: :::::...::.::..: ::::.: :.:.::::::.: CCDS64 EEE---VEESSPLQEPPSQAAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAV 250 260 270 280 290 310 320 330 340 350 360 pF1KE9 QSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLVGLSLLGMLFGAYLMALA :::::::::::::::::::::::::::::::::::::::::: ::::::.. :.:::::: CCDS64 QSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALA 300 310 320 330 340 350 370 380 390 400 410 420 pF1KE9 ILSPCPPLVGTTAGVVLVVLSWVLCLCVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL .::::::::::.:::::::::::::: ::::::::::::::::::::::::::::::::: CCDS64 VLSPCPPLVGTSAGVVLVVLSWVLCLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL 360 370 380 390 400 410 430 440 pF1KE9 LGAGAMFPPTSIYHVFQSRKDCVDPCGP ::: ::::::::::::.:::::.::: CCDS64 LGAVAMFPPTSIYHVFHSRKDCADPCDS 420 430 440 >>CCDS13007.1 SLC52A3 gene_id:113278|Hs108|chr20 (469 aa) initn: 1060 init1: 506 opt: 528 Z-score: 524.1 bits: 106.2 E(32554): 7.2e-23 Smith-Waterman score: 1022; 41.7% identity (64.2% similar) in 472 aa overlap (11-446:4-467) 10 20 30 40 50 60 pF1KE9 MAAPTLGRLVLTHLLVALFGMGSWAAVNGIWVELPVVVKDLPEGWSLPSYLSVVVALGNL : :::: .::::::...::.:::::..: .::::: :::::.::. :.:. CCDS13 MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANI 10 20 30 40 50 70 80 90 100 110 pF1KE9 GLLVVTLWRRLAPGKGEQVPIQVVQVLSV--VGTALLAPLWHHVAPVAGQLHSVAFLTLA : :.::: ... :. .::: . .:.: : ..: ::. .. : ::.:::.:. CCDS13 GPLLVTLLHHFRPSCLSEVPI-IFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLT 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 LVLAMACCTSNVTFLPFLSHLPPPFLRSFFLGQGLSALLPCVLALVQGVGRLEC------ . ::.. :::.::::::.:.:: .: .::.:.:::.::: ..::.:: : : CCDS13 FFLALVDCTSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEI 120 130 140 150 160 170 180 190 200 pF1KE9 ----P-PAPTNGTS---G-P------------PLD------FPERFPASTFFWALTALLV : :.:: :. : : ::. .: .: .:: :. ... CCDS13 SDSVPSPVPTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMA 180 190 200 210 220 230 210 220 230 240 250 260 pF1KE9 TSAAAFRGLLLLLPSLPSVTTGGSGPELQLGSPGAEEEEKEEEEALPLQE-PPSQAAGTI .:: ..: : .. :. . .::.. : ::. : . CCDS13 CCLVAF----FVLQRQPRCWEASVEDLLNDQVTLHSIRPREENDLGPAGTVDSSQGQGYL 240 250 260 270 280 270 280 290 300 310 320 pF1KE9 PGPDPEVHQLFSAHGAFLLGLMAFTSAVTNGVLPSVQSFSCLPYGRLAYHLAVVLGSAAN . .. :: ::. :.::..:.:::.:::::..::: :: .:::::..:. .:: CCDS13 ---EEKAAPCCPAHLAFIYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVAN 290 300 310 320 330 340 330 340 350 360 370 380 pF1KE9 PLACFLAMGVLCRSLAGLVGLSLLGMLFGAYLMALAILSPCPPLVGTTAGVVLVVLSWVL ::: ...: . ::: : ::.:: ::.: ::.:..:::: : : .: ::.: :::: CCDS13 PLASLVSMFLPNRSLLFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVL 350 360 370 380 390 400 390 400 410 420 430 440 pF1KE9 CLCVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGAGAMFPPTSIYHVFQSRKDCVD .::::: . .:. .: ::: :.:.:.:::::: ::: ... ..:.: : CCDS13 FSGCLSYVKVMLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNL 410 420 430 440 450 460 pF1KE9 PCGP : CCDS13 HCPA 448 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 07:03:23 2016 done: Sun Nov 6 07:03:24 2016 Total Scan time: 3.020 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]