FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3140, 350 aa 1>>>pF1KE3140 350 - 350 aa - 350 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2828+/-0.00073; mu= 10.1997+/- 0.045 mean_var=170.9125+/-33.854, 0's: 0 Z-trim(116.0): 69 B-trim: 0 in 0/55 Lambda= 0.098104 statistics sampled from 16462 (16535) to 16462 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.508), width: 16 Scan time: 3.010 The best scores are: opt bits E(32554) CCDS11060.1 RNF167 gene_id:26001|Hs108|chr17 ( 350) 2421 353.9 1.2e-97 CCDS82040.1 RNF167 gene_id:26001|Hs108|chr17 ( 315) 2186 320.6 1.1e-87 CCDS3146.1 RNF13 gene_id:11342|Hs108|chr3 ( 381) 1104 167.5 1.6e-41 CCDS42475.1 ZNRF4 gene_id:148066|Hs108|chr19 ( 429) 728 114.4 1.8e-25 >>CCDS11060.1 RNF167 gene_id:26001|Hs108|chr17 (350 aa) initn: 2421 init1: 2421 opt: 2421 Z-score: 1866.7 bits: 353.9 E(32554): 1.2e-97 Smith-Waterman score: 2421; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350) 10 20 30 40 50 60 pF1KE3 MHPAAFPLPVVVAAVLWGAAPTRGLIRATSDHNASMDFADLPALFGATLSQEGLQGFLVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MHPAAFPLPVVVAAVLWGAAPTRGLIRATSDHNASMDFADLPALFGATLSQEGLQGFLVE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 AHPDNACSPIAPPPPAPVNGSVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 AHPDNACSPIAPPPPAPVNGSVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 NMVWNSEEIQQQIWIPSVFIGERSSEYLRALFVYEKGARVLLVPDNTFPLGYYLIPFTGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 NMVWNSEEIQQQIWIPSVFIGERSSEYLRALFVYEKGARVLLVPDNTFPLGYYLIPFTGI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 VGLLVLAMGAVMIARCIQHRKRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VGLLVLAMGAVMIARCIQHRKRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 DKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEDQEEETQGQEEGDEGEPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 DKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEDQEEETQGQEEGDEGEPR 250 260 270 280 290 300 310 320 330 340 350 pF1KE3 DHPASERTPLLGSSPTLPTSFGSLAPAPLVFPGPSTDPPLSPPSSPVILV :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 DHPASERTPLLGSSPTLPTSFGSLAPAPLVFPGPSTDPPLSPPSSPVILV 310 320 330 340 350 >>CCDS82040.1 RNF167 gene_id:26001|Hs108|chr17 (315 aa) initn: 2186 init1: 2186 opt: 2186 Z-score: 1687.5 bits: 320.6 E(32554): 1.1e-87 Smith-Waterman score: 2186; 100.0% identity (100.0% similar) in 315 aa overlap (36-350:1-315) 10 20 30 40 50 60 pF1KE3 FPLPVVVAAVLWGAAPTRGLIRATSDHNASMDFADLPALFGATLSQEGLQGFLVEAHPDN :::::::::::::::::::::::::::::: CCDS82 MDFADLPALFGATLSQEGLQGFLVEAHPDN 10 20 30 70 80 90 100 110 120 pF1KE3 ACSPIAPPPPAPVNGSVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 ACSPIAPPPPAPVNGSVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWN 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 SEEIQQQIWIPSVFIGERSSEYLRALFVYEKGARVLLVPDNTFPLGYYLIPFTGIVGLLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 SEEIQQQIWIPSVFIGERSSEYLRALFVYEKGARVLLVPDNTFPLGYYLIPFTGIVGLLV 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 LAMGAVMIARCIQHRKRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 LAMGAVMIARCIQHRKRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRV 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE3 LPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEDQEEETQGQEEGDEGEPRDHPAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 LPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEDQEEETQGQEEGDEGEPRDHPAS 220 230 240 250 260 270 310 320 330 340 350 pF1KE3 ERTPLLGSSPTLPTSFGSLAPAPLVFPGPSTDPPLSPPSSPVILV ::::::::::::::::::::::::::::::::::::::::::::: CCDS82 ERTPLLGSSPTLPTSFGSLAPAPLVFPGPSTDPPLSPPSSPVILV 280 290 300 310 >>CCDS3146.1 RNF13 gene_id:11342|Hs108|chr3 (381 aa) initn: 1106 init1: 1085 opt: 1104 Z-score: 858.8 bits: 167.5 E(32554): 1.6e-41 Smith-Waterman score: 1112; 53.3% identity (79.7% similar) in 306 aa overlap (21-325:31-327) 10 20 30 40 50 pF1KE3 MHPAAFPLPVVVAAVLWGAAPTRGLIRATSDHNASMDFADLPALFGATLS :... : : . .:::. : :::: :: : CCDS31 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 QEGLQGFLVEAHPDNACSPIAPPPPAPVNGSVFIALLRRFDCNFDLKVLNAQKAGYGAAV :::.:::....:.::: ::.::: ....::.:.::.:::::.::::::.::: ::. CCDS31 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 VHNVNSNELLNMVWNSEEIQQQIWIPSVFIGERSSEYLRALFVYEKGARVLLVPDNTFPL ::::.:..:..: :. :. ..: :::::::: :.. :. :.::::....:::. ..:: CCDS31 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE3 GYYLIPFTGIVGLLVLAMGAVMIARCIQHRKRLQRNRLTKEQLKQIPTHDYQKGDQYDVC :::::: :::. .. . ::.. .: :.: .:::: :.:::..:.: ..:::.:::: CCDS31 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE3 AICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEDQEEETQG ::::::::::::::.:::.:::: .:::::::.:.::::.::: : . :: :.. ... CCDS31 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSS- 250 260 270 280 290 300 310 320 330 340 pF1KE3 QEEGDEGEPRDHPASERTPLLGSSPTLPT-SFGSLAPAPLVFPGPSTDPPLSPPSSPVIL :::.. ..:.:::: .. . :::.:. CCDS31 QEENE--------VTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDS 300 310 320 330 340 350 350 pF1KE3 V CCDS31 SDAENEINEHDVVVQLQPNGERDYNIANTV 360 370 380 >>CCDS42475.1 ZNRF4 gene_id:148066|Hs108|chr19 (429 aa) initn: 730 init1: 283 opt: 728 Z-score: 570.6 bits: 114.4 E(32554): 1.8e-25 Smith-Waterman score: 778; 39.4% identity (67.5% similar) in 348 aa overlap (21-342:95-427) 10 20 30 40 pF1KE3 MHPAAFPLPVVVAAVLWGAAPTRGLIRAT-SDHNASMDFADLPALFGATL :.....::. :...:.::::::::::. : CCDS42 TAKRVTMGWPRPGRALVAVKALLVLSLLQVPAQAVVRAVLEDNSSSVDFADLPALFGVPL 70 80 90 100 110 120 50 60 70 80 90 100 pF1KE3 SQEGLQGFLVEAHPDNACSPIAPPPPAPVNGSV-FIALLRRFDCNFDLKVLNAQKAGYGA . ::..:.:.:..: ::: :: : . : :. :.:.::.::.:::::::::.::. : CCDS42 APEGIRGYLMEVKPANACHPIEAPRLG--NRSLGAIVLIRRYDCTFDLKVLNAQRAGFEA 130 140 150 160 170 180 110 120 130 140 150 160 pF1KE3 AVVHNVNSNELLNMVWNSEEIQQQIWIPSVFIGERSSEYLRALFVYEKGARVLLVPDNT- :.::::.:..:..:. :... :: :::::..: .:. ::... .:.:..::.::. CCDS42 AIVHNVHSDDLVSMTHVYEDLRGQIAIPSVFVSEAASQDLRVILGCNKSAHALLLPDDPP 190 200 210 220 230 240 170 180 190 200 210 pF1KE3 -FPLGYY-LIPFTGIVG-LLVLAMGAVMIAR--------CIQHRKRLQRNRLTKEQLKQI :: . .. . ..: :.:...: .. : .::. .. . : :.. . CCDS42 CHDLGCHPVLTVSWVLGCTLALVVSAFFVLNHLWLWAQACCSHRRPVKTSTCQKAQVRTF 250 260 270 280 290 300 220 230 240 250 260 270 pF1KE3 PTHDYQKGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQT-RKTCPICKQPV :. :.:::::::::.::.:..:::.:.:: .:.:::..:. :..::.::: : CCDS42 TWHN-------DLCAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSV 310 320 330 340 350 280 290 300 310 320 pF1KE3 HRGPGDEDQ-EEETQGQEEGDEGEPRDHPA---------SERTPLLG-SSPTLPTSFGSL . ::. . : . .. : . : .: :.: ::: .:: : :: CCDS42 ---AATEDSFDSTTYSFRDEDPSLPGHRPPIWAIQVQLRSRRLELLGRASPHCHCSTTSL 360 370 380 390 400 410 330 340 350 pF1KE3 APAPLVFPGPSTDPPLSPPSSPVILV . :. :: .: CCDS42 EAE---YTTVSSAPPEAPGQ 420 350 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:57:29 2016 done: Sun Nov 6 13:57:29 2016 Total Scan time: 3.010 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]