FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1891, 420 aa 1>>>pF1KE1891 420 - 420 aa - 420 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9026+/-0.000335; mu= 15.2956+/- 0.021 mean_var=85.7090+/-17.196, 0's: 0 Z-trim(115.2): 21 B-trim: 0 in 0/55 Lambda= 0.138535 statistics sampled from 25541 (25562) to 25541 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.3), width: 16 Scan time: 9.490 The best scores are: opt bits E(85289) NP_060616 (OMIM: 612600) rRNA methyltransferase 3, ( 420) 2814 572.2 8.3e-163 NP_001304876 (OMIM: 612600) rRNA methyltransferase ( 224) 1522 313.8 2.7e-85 >>NP_060616 (OMIM: 612600) rRNA methyltransferase 3, mit (420 aa) initn: 2814 init1: 2814 opt: 2814 Z-score: 3043.9 bits: 572.2 E(85289): 8.3e-163 Smith-Waterman score: 2814; 100.0% identity (100.0% similar) in 420 aa overlap (1-420:1-420) 10 20 30 40 50 60 pF1KE1 MAALVRPARFVVRPLLQVVQAWDLDARRWVRALRRSPVKVVFPSGEVVEQKRAPGKQPRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MAALVRPARFVVRPLLQVVQAWDLDARRWVRALRRSPVKVVFPSGEVVEQKRAPGKQPRK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 APSEASAQEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 APSEASAQEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIKVKFEDIKDWSDLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 GKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIKVKFEDIKDWSDLV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TPQGIMGIFAKPDHVKMTYPKTQLQHSLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 TPQGIMGIFAKPDHVKMTYPKTQLQHSLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 TKGCVDAWEPKVLRAGMGAHFRMPIINNLEWETVPNYLPPDTRVYVADNCGLYAQAEMSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 TKGCVDAWEPKVLRAGMGAHFRMPIINNLEWETVPNYLPPDTRVYVADNCGLYAQAEMSN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 KASDHGWVCDQRVMKFHKYEEEEDVETGASQDWLPHVEVQSYDSDWTEAPAAVVIGGETY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 KASDHGWVCDQRVMKFHKYEEEEDVETGASQDWLPHVEVQSYDSDWTEAPAAVVIGGETY 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 GVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRGRAEDLSRDRSYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 GVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRGRAEDLSRDRSYH 370 380 390 400 410 420 >>NP_001304876 (OMIM: 612600) rRNA methyltransferase 3, (224 aa) initn: 1522 init1: 1522 opt: 1522 Z-score: 1652.4 bits: 313.8 E(85289): 2.7e-85 Smith-Waterman score: 1522; 100.0% identity (100.0% similar) in 224 aa overlap (197-420:1-224) 170 180 190 200 210 220 pF1KE1 KVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQHSLPLLLICDNLRDPGNLGTI :::::::::::::::::::::::::::::: NP_001 MTYPKTQLQHSLPLLLICDNLRDPGNLGTI 10 20 30 230 240 250 260 270 280 pF1KE1 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPIINNLEWETVPNYLPPDTRVYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPIINNLEWETVPNYLPPDTRVYV 40 50 60 70 80 90 290 300 310 320 330 340 pF1KE1 ADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETGASQDWLPHVEVQSYDSDW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETGASQDWLPHVEVQSYDSDW 100 110 120 130 140 150 350 360 370 380 390 400 pF1KE1 TEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL 160 170 180 190 200 210 410 420 pF1KE1 RGRAEDLSRDRSYH :::::::::::::: NP_001 RGRAEDLSRDRSYH 220 420 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:01:25 2016 done: Sun Nov 6 14:01:27 2016 Total Scan time: 9.490 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]