(Circular) (Six-base) MAPSORT of: pFN21AE1625.seq Check: 8069 from: 1 to: 5131 pFN21AE1625 5131 bp With 182 enzymes: SgfI * August 16, 2010 14:48 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2172 2941 278 Size: 53 83 186 936 636 769 2468 Fragments arranged by size: 2468 936 769 636 186 83 53 AccI GT'mk_AC Cuts at: 1937 2474 1937 Size: 537 4594 Acc65I G'GTAC_C Cuts at: 2452 2452 Size: 5131 AclI AA'CG_TT Cuts at: 1563 3258 3631 1563 Size: 1695 373 3063 Fragments arranged by size: 3063 1695 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2411 3194 4578 4846 1632 Size: 779 783 1384 268 1917 Fragments arranged by size: 1917 1384 783 779 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4934 AflIII A'CryG_T Cuts at: 1203 4030 5007 1203 Size: 2827 977 1327 Fragments arranged by size: 2827 1327 977 AgeI A'CCGG_T Cuts at: 3962 3962 Size: 5131 AhdI GACnn_n'nnGTC Cuts at: 3860 3860 Size: 5131 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5131 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5131 AlwNI CAG_nnn'CTG Cuts at: 2874 4446 2874 Size: 1572 3559 ApaLI G'TGCA_C Cuts at: 2158 3188 4344 2158 Size: 1030 1156 2945 Fragments arranged by size: 2945 1156 1030 ApoI r'AATT_y Cuts at: 1493 2323 2440 2666 2818 4927 1493 Size: 830 117 226 152 2109 1697 Fragments arranged by size: 2109 1697 830 226 152 117 AseI AT'TA_AT Cuts at: 160 1032 3685 160 Size: 872 2653 1606 Fragments arranged by size: 2653 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5131 AvaI C'yCGr_G Cuts at: 1870 1943 2456 1870 Size: 73 513 4545 Fragments arranged by size: 4545 513 73 BamHI G'GATC_C Cuts at: 2461 2828 2461 Size: 367 4764 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2452 3907 618 Size: 325 217 627 665 1455 1842 Fragments arranged by size: 1842 1455 665 627 325 217 BanII G_rGCy'C Cuts at: 1391 2450 1391 Size: 1059 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4160 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3322 3356 1903 Size: 34 1385 34 3678 Fragments arranged by size: 3678 1385 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3023 4233 3023 Size: 1210 3921 BclI T'GATC_A Cuts at: 1548 2343 1548 Size: 795 4336 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3742 136 Size: 107 122 71 631 605 2070 1525 Fragments arranged by size: 2070 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5126 5126 Size: 5131 BlpI GC'TnA_GC Cuts at: 2548 2548 Size: 5131 Bme1580I G_kGCm'C Cuts at: 1790 2162 3192 4348 1790 Size: 372 1030 1156 2573 Fragments arranged by size: 2573 1156 1030 372 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5131 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2862 3820 442 Size: 416 53 83 399 24 1445 958 1753 Fragments arranged by size: 1753 1445 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5131 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2384 3791 1239 Size: 1145 1407 2579 Fragments arranged by size: 2579 1407 1145 Bpu10I CC'TnA_GC Cuts at: 2331 2331 Size: 5131 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3256 4121 4419 3256 Size: 865 298 3968 Fragments arranged by size: 3968 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3794 882 Size: 617 2295 2219 Fragments arranged by size: 2295 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2244 2922 493 Size: 711 1040 678 2702 Fragments arranged by size: 2702 1040 711 678 BsaBI GATnn'nnATC Cuts at: 5125 5125 Size: 5131 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2169 2418 2938 3320 Size: 53 83 186 936 636 249 520 382 Cuts at: 3320 3955 275 Size: 635 1451 Fragments arranged by size: 1451 936 636 635 520 382 249 186 83 53 BsaWI w'CCGG_w Cuts at: 2172 3564 3962 4236 4383 4794 2172 Size: 1392 398 274 147 411 2509 Fragments arranged by size: 2509 1392 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4906 Fragments arranged by size: 4906 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5131 BseYI C'CCAG_C Cuts at: 4334 4830 4334 Size: 496 4635 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4558 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2073 2581 3342 4370 1540 Size: 275 186 72 508 761 1028 2301 Fragments arranged by size: 2301 1028 761 508 275 186 72 BsiHKAI G_wGCw'C Cuts at: 2162 3192 3277 4348 2162 Size: 1030 85 1071 2945 Fragments arranged by size: 2945 1071 1030 85 BsmI GAATG_Cn' Cuts at: 2642 2735 2642 Size: 93 5038 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2162 2450 3192 3277 4348 1391 Size: 399 372 288 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 372 288 85 BspEI T'CCGG_A Cuts at: 4794 4794 Size: 5131 BspHI T'CATG_A Cuts at: 3020 4750 3020 Size: 1730 3401 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2486 844 Size: 1642 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2132 3018 1394 Size: 429 309 886 3507 Fragments arranged by size: 3507 886 429 309 BsrDI GCAATG_nn' Cuts at: 65 1248 3626 3800 65 Size: 1183 2378 174 1396 Fragments arranged by size: 2378 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3775 3962 1700 Size: 110 1965 187 2869 Fragments arranged by size: 2869 1965 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5131 BssHII G'CGCG_C Cuts at: 1925 2275 1925 Size: 350 4781 BssSI C'ACGA_G Cuts at: 3191 4203 3191 Size: 1012 4119 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5131 BstBI TT'CG_AA Cuts at: 3935 3935 Size: 5131 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5131 BstYI r'GATC_y Cuts at: 1972 2461 2828 3213 3230 4682 4768 4780 5126 Size: 489 367 385 17 1452 86 12 346 Cuts at: 5126 1972 Size: 1977 Fragments arranged by size: 1977 1452 489 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3640 Fragments arranged by size: 3640 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4392 Fragments arranged by size: 4392 683 56 BtsI GCAGTG_nn' Cuts at: 2162 2647 3441 3461 2162 Size: 485 794 20 3832 Fragments arranged by size: 3832 794 485 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5131 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5096 DraI TTT'AAA Cuts at: 2092 2435 2092 Size: 343 4788 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4138 809 Size: 507 2822 1802 Fragments arranged by size: 2822 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2007 2070 2578 Size: 54 1425 50 275 18 177 63 508 Cuts at: 2578 3467 5096 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 508 275 177 63 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2070 2578 1537 Size: 275 258 508 4090 Fragments arranged by size: 4090 508 275 258 EarI CTCTTCn'nnn_ Cuts at: 1353 3061 1353 Size: 1708 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3718 4092 4238 387 Size: 1064 138 2129 374 146 1280 Fragments arranged by size: 2129 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2384 2411 3194 3791 4578 4846 1239 Size: 393 752 27 783 597 787 268 1524 Fragments arranged by size: 1524 787 783 752 597 393 268 27 EcoNI CCTnn'n_nnAGG Cuts at: 2306 2306 Size: 5131 EcoRI G'AATT_C Cuts at: 2440 2818 2440 Size: 378 4753 FspI TGC'GCA Cuts at: 3637 3637 Size: 5131 HaeII r_GCGC'y Cuts at: 1678 4278 1678 Size: 2600 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2051 2083 2335 2367 3772 Size: 32 135 32 479 32 252 32 1405 Cuts at: 3772 3804 3846 3878 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1405 479 252 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2475 2721 669 Size: 988 281 537 246 3079 Fragments arranged by size: 3079 988 537 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5131 HpaI GTT'AAC Cuts at: 2721 2721 Size: 5131 KpnI G_GTAC'C Cuts at: 2456 2456 Size: 5131 MfeI C'AATT_G Cuts at: 2730 2730 Size: 5131 MluI A'CGCG_T Cuts at: 5007 5007 Size: 5131 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4245 4429 1305 Size: 2940 184 2007 Fragments arranged by size: 2940 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2009 10 Size: 54 1425 343 177 3132 Fragments arranged by size: 3132 1425 343 177 54 MslI CAynn'nnrTG Cuts at: 518 1166 2081 3089 3448 3607 518 Size: 648 915 1008 359 159 2042 Fragments arranged by size: 2042 1008 915 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2265 2547 3224 4372 4617 1606 Size: 659 282 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 659 282 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3640 Fragments arranged by size: 3640 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5131 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5131 NotI GC'GGCC_GC Cuts at: 2578 2578 Size: 5131 NspI r_CATG'y Cuts at: 1132 1229 2489 4034 1132 Size: 97 1260 1545 2229 Fragments arranged by size: 2229 1545 1260 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5131 PciI A'CATG_T Cuts at: 4030 4030 Size: 5131 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5131 PmeI GTTT'AAAC Cuts at: 2435 2435 Size: 5131 PmlI CAC'GTG Cuts at: 2244 2244 Size: 5131 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3200 3232 4713 4745 3200 Size: 32 1481 32 3586 Fragments arranged by size: 3586 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5131 PsiI TTA'TAA Cuts at: 2701 2701 Size: 5131 PstI C_TGCA'G Cuts at: 830 2274 2483 830 Size: 1444 209 3478 Fragments arranged by size: 3478 1444 209 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5131 SalI G'TCGA_C Cuts at: 1936 2473 1936 Size: 537 4594 SbfI CC_TGCA'GG Cuts at: 2483 2483 Size: 5131 ScaI AGT'ACT Cuts at: 3379 5091 3379 Size: 1712 3419 SexAI A'CCwGG_T Cuts at: 2049 2049 Size: 5131 SfcI C'TryA_G Cuts at: 826 1045 2270 2479 3614 4295 4486 826 Size: 219 1225 209 1135 681 191 1471 Fragments arranged by size: 1471 1225 1135 681 219 209 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5131 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5131 SmaI CCC'GGG Cuts at: 1872 2458 1872 Size: 586 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3235 4136 4398 820 Size: 197 926 1292 901 262 1553 Fragments arranged by size: 1553 1292 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 2922 493 Size: 2429 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5131 SphI G_CATG'C Cuts at: 1132 2489 1132 Size: 1357 3774 SspI AAT'ATT Cuts at: 5 52 3055 5 Size: 47 3003 2081 Fragments arranged by size: 3003 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5131 StyI C'CwwG_G Cuts at: 513 1065 2004 2570 513 Size: 552 939 566 3074 Fragments arranged by size: 3074 939 566 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2071 3158 3175 3328 3513 3958 325 Size: 1255 491 1087 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1087 491 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3377 5089 96 Size: 274 80 33 51 1443 1400 1712 138 Fragments arranged by size: 1712 1443 1400 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5091 5123 5091 Size: 32 5099 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5131 XbaI T'CTAG_A Cuts at: 2467 2467 Size: 5131 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5131 XmaI C'CCGG_G Cuts at: 1870 2456 1870 Size: 586 4545 XmnI GAAnn'nnTTC Cuts at: 3260 3260 Size: 5131 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2170 2939 276 Size: 53 83 186 936 636 769 2468 Fragments arranged by size: 2468 936 769 636 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PmlI PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SfiI SfoI SrfI SwaI XcmI