FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9250, 353 aa 1>>>pF1KE9250 353 - 353 aa - 353 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0126+/-0.000479; mu= 12.4185+/- 0.029 mean_var=70.4194+/-14.687, 0's: 0 Z-trim(109.7): 16 B-trim: 1006 in 2/48 Lambda= 0.152837 statistics sampled from 17941 (17948) to 17941 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.592), E-opt: 0.2 (0.21), width: 16 Scan time: 6.150 The best scores are: opt bits E(85289) NP_001094095 (OMIM: 611509) centromere protein N i ( 353) 2320 521.0 1.5e-147 XP_006721299 (OMIM: 611509) PREDICTED: centromere ( 339) 2025 456.0 5.5e-128 NP_001094094 (OMIM: 611509) centromere protein N i ( 339) 2025 456.0 5.5e-128 NP_001257402 (OMIM: 611509) centromere protein N i ( 319) 1417 321.9 1.2e-87 NP_001257403 (OMIM: 611509) centromere protein N i ( 305) 1174 268.3 1.5e-71 XP_016878945 (OMIM: 611509) PREDICTED: centromere ( 204) 1171 267.6 1.7e-71 NP_060925 (OMIM: 611509) centromere protein N isof ( 204) 1171 267.6 1.7e-71 >>NP_001094095 (OMIM: 611509) centromere protein N isofo (353 aa) initn: 2320 init1: 2320 opt: 2320 Z-score: 2770.0 bits: 521.0 E(85289): 1.5e-147 Smith-Waterman score: 2320; 99.4% identity (100.0% similar) in 353 aa overlap (1-353:1-353) 10 20 30 40 50 60 pF1KE9 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: NP_001 ASISDAALLDIIYMQFHQHQKVWEVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAERKEPLRCLIKFSSP :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: NP_001 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSP 250 260 270 280 290 300 310 320 330 340 350 pF1KE9 HLLEALKSLAPAALVCRIQKLLCYSGSHSQGTQDPSSWQKDLYLLFVPLYPRC ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HLLEALKSLAPAALVCRIQKLLCYSGSHSQGTQDPSSWQKDLYLLFVPLYPRC 310 320 330 340 350 >>XP_006721299 (OMIM: 611509) PREDICTED: centromere prot (339 aa) initn: 2076 init1: 2025 opt: 2025 Z-score: 2418.7 bits: 456.0 E(85289): 5.5e-128 Smith-Waterman score: 2025; 98.7% identity (100.0% similar) in 314 aa overlap (1-314:1-314) 10 20 30 40 50 60 pF1KE9 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: XP_006 ASISDAALLDIIYMQFHQHQKVWEVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAERKEPLRCLIKFSSP :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: XP_006 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSP 250 260 270 280 290 300 310 320 330 340 350 pF1KE9 HLLEALKSLAPAALVCRIQKLLCYSGSHSQGTQDPSSWQKDLYLLFVPLYPRC ::::::::::::.. XP_006 HLLEALKSLAPAGIADAPLSPLLTCIPNKRMNYFKIRDK 310 320 330 >>NP_001094094 (OMIM: 611509) centromere protein N isofo (339 aa) initn: 2076 init1: 2025 opt: 2025 Z-score: 2418.7 bits: 456.0 E(85289): 5.5e-128 Smith-Waterman score: 2025; 98.7% identity (100.0% similar) in 314 aa overlap (1-314:1-314) 10 20 30 40 50 60 pF1KE9 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: NP_001 ASISDAALLDIIYMQFHQHQKVWEVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAERKEPLRCLIKFSSP :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: NP_001 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSP 250 260 270 280 290 300 310 320 330 340 350 pF1KE9 HLLEALKSLAPAALVCRIQKLLCYSGSHSQGTQDPSSWQKDLYLLFVPLYPRC ::::::::::::.. NP_001 HLLEALKSLAPAGIADAPLSPLLTCIPNKRMNYFKIRDK 310 320 330 >>NP_001257402 (OMIM: 611509) centromere protein N isofo (319 aa) initn: 1880 init1: 1417 opt: 1417 Z-score: 1694.6 bits: 321.9 E(85289): 1.2e-87 Smith-Waterman score: 1816; 92.4% identity (93.3% similar) in 314 aa overlap (1-314:1-294) 10 20 30 40 50 60 pF1KE9 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT :::::::::::: ::::::::::::::::::::::::::: NP_001 ASISDAALLDIIC--------------------EDVDLFDMKQFKNSFKKILQRALKNVT 70 80 90 100 130 140 150 160 170 180 pF1KE9 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE9 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE9 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAERKEPLRCLIKFSSP :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: NP_001 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSP 230 240 250 260 270 280 310 320 330 340 350 pF1KE9 HLLEALKSLAPAALVCRIQKLLCYSGSHSQGTQDPSSWQKDLYLLFVPLYPRC ::::::::::::.. NP_001 HLLEALKSLAPAGIADAPLSPLLTCIPNKRMNYFKIRDK 290 300 310 >>NP_001257403 (OMIM: 611509) centromere protein N isofo (305 aa) initn: 1832 init1: 1164 opt: 1174 Z-score: 1405.4 bits: 268.3 E(85289): 1.5e-71 Smith-Waterman score: 1734; 87.9% identity (89.2% similar) in 314 aa overlap (1-314:1-280) 10 20 30 40 50 60 pF1KE9 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: NP_001 ASISDAALLDIIYMQFHQHQKVWEVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQ--- 130 140 150 160 170 190 200 210 220 230 240 pF1KE9 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE ::::::::::::::::::::::::::::: NP_001 -------------------------------TFETHNSTTPLQERSLGLDINMDSRIIHE 180 190 200 250 260 270 280 290 300 pF1KE9 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAERKEPLRCLIKFSSP :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: NP_001 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSP 210 220 230 240 250 260 310 320 330 340 350 pF1KE9 HLLEALKSLAPAALVCRIQKLLCYSGSHSQGTQDPSSWQKDLYLLFVPLYPRC ::::::::::::.. NP_001 HLLEALKSLAPAGIADAPLSPLLTCIPNKRMNYFKIRDK 270 280 290 300 >>XP_016878945 (OMIM: 611509) PREDICTED: centromere prot (204 aa) initn: 1197 init1: 1171 opt: 1171 Z-score: 1404.7 bits: 267.6 E(85289): 1.7e-71 Smith-Waterman score: 1171; 96.7% identity (98.4% similar) in 184 aa overlap (1-184:1-184) 10 20 30 40 50 60 pF1KE9 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: XP_016 ASISDAALLDIIYMQFHQHQKVWEVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : XP_016 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQELE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE ..: XP_016 ATGKIYLRQEEIILDITEMKKACN 190 200 >>NP_060925 (OMIM: 611509) centromere protein N isoform (204 aa) initn: 1197 init1: 1171 opt: 1171 Z-score: 1404.7 bits: 267.6 E(85289): 1.7e-71 Smith-Waterman score: 1171; 96.7% identity (98.4% similar) in 184 aa overlap (1-184:1-184) 10 20 30 40 50 60 pF1KE9 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: NP_060 ASISDAALLDIIYMQFHQHQKVWEVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : NP_060 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQELE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE ..: NP_060 ATGKIYLRQEEIILDITEMKKACN 190 200 353 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:30:28 2016 done: Sun Nov 6 06:30:29 2016 Total Scan time: 6.150 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]