Result of FASTA (ccds) for
pFN21AE9250
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9250, 353 aa
1>>>pF1KE9250 353 - 353 aa - 353 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9861+/-0.00104; mu= 12.3612+/- 0.063
mean_var=65.6845+/-13.319, 0's: 0 Z-trim(102.9): 14 B-trim: 0 in 0/49
Lambda= 0.158250
statistics sampled from 7155 (7160) to 7155 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.601), E-opt: 0.2 (0.22), width: 16
Scan time: 2.260
The best scores are: opt bits E(32554)
CCDS42199.1 CENPN gene_id:55839|Hs108|chr16 ( 353) 2320 538.8 2.6e-153
CCDS42200.1 CENPN gene_id:55839|Hs108|chr16 ( 339) 2025 471.4 4.8e-133
CCDS58483.1 CENPN gene_id:55839|Hs108|chr16 ( 319) 1417 332.6 2.8e-91
CCDS58482.1 CENPN gene_id:55839|Hs108|chr16 ( 305) 1174 277.1 1.3e-74
CCDS10931.1 CENPN gene_id:55839|Hs108|chr16 ( 204) 1171 276.4 1.5e-74
>>CCDS42199.1 CENPN gene_id:55839|Hs108|chr16 (353 aa)
initn: 2320 init1: 2320 opt: 2320 Z-score: 2865.8 bits: 538.8 E(32554): 2.6e-153
Smith-Waterman score: 2320; 99.4% identity (100.0% similar) in 353 aa overlap (1-353:1-353)
10 20 30 40 50 60
pF1KE9 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS42 ASISDAALLDIIYMQFHQHQKVWEVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAERKEPLRCLIKFSSP
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS42 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSP
250 260 270 280 290 300
310 320 330 340 350
pF1KE9 HLLEALKSLAPAALVCRIQKLLCYSGSHSQGTQDPSSWQKDLYLLFVPLYPRC
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HLLEALKSLAPAALVCRIQKLLCYSGSHSQGTQDPSSWQKDLYLLFVPLYPRC
310 320 330 340 350
>>CCDS42200.1 CENPN gene_id:55839|Hs108|chr16 (339 aa)
initn: 2076 init1: 2025 opt: 2025 Z-score: 2502.1 bits: 471.4 E(32554): 4.8e-133
Smith-Waterman score: 2025; 98.7% identity (100.0% similar) in 314 aa overlap (1-314:1-314)
10 20 30 40 50 60
pF1KE9 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS42 ASISDAALLDIIYMQFHQHQKVWEVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAERKEPLRCLIKFSSP
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS42 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSP
250 260 270 280 290 300
310 320 330 340 350
pF1KE9 HLLEALKSLAPAALVCRIQKLLCYSGSHSQGTQDPSSWQKDLYLLFVPLYPRC
::::::::::::..
CCDS42 HLLEALKSLAPAGIADAPLSPLLTCIPNKRMNYFKIRDK
310 320 330
>>CCDS58483.1 CENPN gene_id:55839|Hs108|chr16 (319 aa)
initn: 1880 init1: 1417 opt: 1417 Z-score: 1752.4 bits: 332.6 E(32554): 2.8e-91
Smith-Waterman score: 1816; 92.4% identity (93.3% similar) in 314 aa overlap (1-314:1-294)
10 20 30 40 50 60
pF1KE9 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT
:::::::::::: :::::::::::::::::::::::::::
CCDS58 ASISDAALLDIIC--------------------EDVDLFDMKQFKNSFKKILQRALKNVT
70 80 90 100
130 140 150 160 170 180
pF1KE9 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE9 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE9 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAERKEPLRCLIKFSSP
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS58 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSP
230 240 250 260 270 280
310 320 330 340 350
pF1KE9 HLLEALKSLAPAALVCRIQKLLCYSGSHSQGTQDPSSWQKDLYLLFVPLYPRC
::::::::::::..
CCDS58 HLLEALKSLAPAGIADAPLSPLLTCIPNKRMNYFKIRDK
290 300 310
>>CCDS58482.1 CENPN gene_id:55839|Hs108|chr16 (305 aa)
initn: 1832 init1: 1164 opt: 1174 Z-score: 1452.9 bits: 277.1 E(32554): 1.3e-74
Smith-Waterman score: 1734; 87.9% identity (89.2% similar) in 314 aa overlap (1-314:1-280)
10 20 30 40 50 60
pF1KE9 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS58 ASISDAALLDIIYMQFHQHQKVWEVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQ---
130 140 150 160 170
190 200 210 220 230 240
pF1KE9 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE
:::::::::::::::::::::::::::::
CCDS58 -------------------------------TFETHNSTTPLQERSLGLDINMDSRIIHE
180 190 200
250 260 270 280 290 300
pF1KE9 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAERKEPLRCLIKFSSP
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS58 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSP
210 220 230 240 250 260
310 320 330 340 350
pF1KE9 HLLEALKSLAPAALVCRIQKLLCYSGSHSQGTQDPSSWQKDLYLLFVPLYPRC
::::::::::::..
CCDS58 HLLEALKSLAPAGIADAPLSPLLTCIPNKRMNYFKIRDK
270 280 290 300
>>CCDS10931.1 CENPN gene_id:55839|Hs108|chr16 (204 aa)
initn: 1197 init1: 1171 opt: 1171 Z-score: 1452.1 bits: 276.4 E(32554): 1.5e-74
Smith-Waterman score: 1171; 96.7% identity (98.4% similar) in 184 aa overlap (1-184:1-184)
10 20 30 40 50 60
pF1KE9 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS10 ASISDAALLDIIYMQFHQHQKVWEVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS10 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQELE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE
..:
CCDS10 ATGKIYLRQEEIILDITEMKKACN
190 200
353 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 06:30:28 2016 done: Sun Nov 6 06:30:28 2016
Total Scan time: 2.260 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]