FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1153, 500 aa
  1>>>pF1KE1153 500 - 500 aa - 500 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9231+/-0.00083; mu= 7.9174+/- 0.050
 mean_var=156.2663+/-30.837, 0's: 0 Z-trim(113.2): 10  B-trim: 49 in 1/52
 Lambda= 0.102599
 statistics sampled from 13876 (13883) to 13876 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.426), width:  16
 Scan time:  3.510

The best scores are:                                      opt bits E(32554)
CCDS10879.2 TERF2 gene_id:7014|Hs108|chr16         ( 542) 3273 496.0 4.3e-140


>>CCDS10879.2 TERF2 gene_id:7014|Hs108|chr16              (542 aa)
 initn: 3273 init1: 3273 opt: 3273  Z-score: 2628.7  bits: 496.0 E(32554): 4.3e-140
Smith-Waterman score: 3273; 100.0% identity (100.0% similar) in 500 aa overlap (1-500:43-542)

                                             10        20        30
pF1KE1                               MAGGGGSSDGSGRAAGRRASRSSGRARRGR
                                     ::::::::::::::::::::::::::::::
CCDS10 GPGVVRDPAASQPRKRPGREGGEGARRSDTMAGGGGSSDGSGRAAGRRASRSSGRARRGR
             20        30        40        50        60        70  

               40        50        60        70        80        90
pF1KE1 HEPGLGGPAERGAGEARLEEAVNRWVLKFYFHEALRAFRGSRYGDFRQIRDIMQALLVRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HEPGLGGPAERGAGEARLEEAVNRWVLKFYFHEALRAFRGSRYGDFRQIRDIMQALLVRP
             80        90       100       110       120       130  

              100       110       120       130       140       150
pF1KE1 LGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTEFTLTEAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTEFTLTEAVV
            140       150       160       170       180       190  

              160       170       180       190       200       210
pF1KE1 ESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQ
            200       210       220       230       240       250  

              220       230       240       250       260       270
pF1KE1 NFSYETFQQKMLRFLESHLDDAEPYLLTMAKKALKSESAASSTGKEDKQPAPGPVEKPPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NFSYETFQQKMLRFLESHLDDAEPYLLTMAKKALKSESAASSTGKEDKQPAPGPVEKPPR
            260       270       280       290       300       310  

              280       290       300       310       320       330
pF1KE1 EPARQLRNPPTTIGMMTLKAAFKTLSGAQDSEAAFAKLDQKDLVLPTQALPASPALKNKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EPARQLRNPPTTIGMMTLKAAFKTLSGAQDSEAAFAKLDQKDLVLPTQALPASPALKNKR
            320       330       340       350       360       370  

              340       350       360       370       380       390
pF1KE1 PRKDENESSAPADGEGGSELQPKNKRMTISRLVLEEDSQSTEPSAGLNSSQEAASAPPSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PRKDENESSAPADGEGGSELQPKNKRMTISRLVLEEDSQSTEPSAGLNSSQEAASAPPSK
            380       390       400       410       420       430  

              400       410       420       430       440       450
pF1KE1 PTVLNQPLPGEKNPKVPKGKWNSSNGVEEKETWVEEDELFQVQAAPDEDSTTNITKKQKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PTVLNQPLPGEKNPKVPKGKWNSSNGVEEKETWVEEDELFQVQAAPDEDSTTNITKKQKW
            440       450       460       470       480       490  

              460       470       480       490       500
pF1KE1 TVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN
            500       510       520       530       540  




500 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:44:47 2016 done: Mon Nov  7 19:44:47 2016
 Total Scan time:  3.510 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]