FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5625, 493 aa 1>>>pF1KE5625 493 - 493 aa - 493 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7969+/-0.000356; mu= 16.1707+/- 0.022 mean_var=80.9851+/-15.847, 0's: 0 Z-trim(114.0): 31 B-trim: 0 in 0/55 Lambda= 0.142519 statistics sampled from 23576 (23600) to 23576 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.277), width: 16 Scan time: 9.910 The best scores are: opt bits E(85289) NP_001258691 (OMIM: 609707) tRNA-dihydrouridine(20 ( 493) 3260 680.2 3.7e-195 NP_060273 (OMIM: 609707) tRNA-dihydrouridine(20) s ( 493) 3260 680.2 3.7e-195 NP_001258692 (OMIM: 609707) tRNA-dihydrouridine(20 ( 458) 2455 514.6 2.3e-145 >>NP_001258691 (OMIM: 609707) tRNA-dihydrouridine(20) sy (493 aa) initn: 3260 init1: 3260 opt: 3260 Z-score: 3624.7 bits: 680.2 E(85289): 3.7e-195 Smith-Waterman score: 3260; 100.0% identity (100.0% similar) in 493 aa overlap (1-493:1-493) 10 20 30 40 50 60 pF1KE5 MILNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MILNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 STVDFVAPDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 STVDFVAPDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 STKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 STKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 AVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVM 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 VARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 LHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 RRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 LAEQAAAIVCLRSQGLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LAEQAAAIVCLRSQGLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFV 430 440 450 460 470 480 490 pF1KE5 ALGSGEESPLEGW ::::::::::::: NP_001 ALGSGEESPLEGW 490 >>NP_060273 (OMIM: 609707) tRNA-dihydrouridine(20) synth (493 aa) initn: 3260 init1: 3260 opt: 3260 Z-score: 3624.7 bits: 680.2 E(85289): 3.7e-195 Smith-Waterman score: 3260; 100.0% identity (100.0% similar) in 493 aa overlap (1-493:1-493) 10 20 30 40 50 60 pF1KE5 MILNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MILNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 STVDFVAPDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 STVDFVAPDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 STKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 STKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 AVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 AVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVM 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 VARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 VARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 LHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 LHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 RRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 RRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 LAEQAAAIVCLRSQGLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 LAEQAAAIVCLRSQGLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFV 430 440 450 460 470 480 490 pF1KE5 ALGSGEESPLEGW ::::::::::::: NP_060 ALGSGEESPLEGW 490 >>NP_001258692 (OMIM: 609707) tRNA-dihydrouridine(20) sy (458 aa) initn: 2455 init1: 2455 opt: 2455 Z-score: 2730.6 bits: 514.6 E(85289): 2.3e-145 Smith-Waterman score: 2955; 92.9% identity (92.9% similar) in 493 aa overlap (1-493:1-458) 10 20 30 40 50 60 pF1KE5 MILNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MILNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 STVDFVAPDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQY :::::::::::::::::::::::::::: NP_001 STVDFVAPDDRVVFRTCEREQNRVVFQM-------------------------------- 70 80 130 140 150 160 170 180 pF1KE5 STKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAI ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ---GGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAI 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE5 AVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVM 150 160 170 180 190 200 250 260 270 280 290 300 pF1KE5 VARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRL 210 220 230 240 250 260 310 320 330 340 350 360 pF1KE5 LHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFD 270 280 290 300 310 320 370 380 390 400 410 420 pF1KE5 RRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKK 330 340 350 360 370 380 430 440 450 460 470 480 pF1KE5 LAEQAAAIVCLRSQGLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LAEQAAAIVCLRSQGLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFV 390 400 410 420 430 440 490 pF1KE5 ALGSGEESPLEGW ::::::::::::: NP_001 ALGSGEESPLEGW 450 493 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:17:38 2016 done: Tue Nov 8 05:17:39 2016 Total Scan time: 9.910 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]