FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5561, 422 aa
  1>>>pF1KE5561 422 - 422 aa - 422 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5864+/-0.000838; mu= 15.2164+/- 0.051
 mean_var=63.1375+/-12.767, 0's: 0 Z-trim(106.2): 12  B-trim: 0 in 0/52
 Lambda= 0.161410
 statistics sampled from 8829 (8833) to 8829 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.271), width:  16
 Scan time:  1.610

The best scores are:                                      opt bits E(32554)
CCDS10828.1 C16orf70 gene_id:80262|Hs108|chr16     ( 422) 2884 680.3 9.2e-196


>>CCDS10828.1 C16orf70 gene_id:80262|Hs108|chr16          (422 aa)
 initn: 2884 init1: 2884 opt: 2884  Z-score: 3628.1  bits: 680.3 E(32554): 9.2e-196
Smith-Waterman score: 2884; 100.0% identity (100.0% similar) in 422 aa overlap (1-422:1-422)

               10        20        30        40        50        60
pF1KE5 MLDLEVVPERSLGNEQWEFTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLDLEVVPERSLGNEQWEFTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TQDGIKLMFDAFNQRLKVIEVCDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TQDGIKLMFDAFNQRLKVIEVCDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 NSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 DTKAPMMPLSCFLGNVYAESVDVLRDGTGPAGLRLRLLAAGCGPGLLADAKMRVFERSVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DTKAPMMPLSCFLGNVYAESVDVLRDGTGPAGLRLRLLAAGCGPGLLADAKMRVFERSVY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 FGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 THKVKKFVLHTNYPGHYNFNIYHRCEFKIPLAIKKENADGQTETCTTYSKWDNIQELLGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 THKVKKFVLHTNYPGHYNFNIYHRCEFKIPLAIKKENADGQTETCTTYSKWDNIQELLGH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 PVEKPVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGSHLRTAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PVEKPVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGSHLRTAE
              370       380       390       400       410       420

         
pF1KE5 LP
       ::
CCDS10 LP
         




422 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:50:34 2016 done: Tue Nov  8 01:50:34 2016
 Total Scan time:  1.610 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]