FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3074, 234 aa
  1>>>pF1KE3074 234 - 234 aa - 234 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2540+/-0.000842; mu= 14.5871+/- 0.050
 mean_var=63.5713+/-12.966, 0's: 0 Z-trim(105.6): 38  B-trim: 0 in 0/50
 Lambda= 0.160858
 statistics sampled from 8510 (8533) to 8510 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.262), width:  16
 Scan time:  2.240

The best scores are:                                      opt bits E(32554)
CCDS10817.1 CMTM4 gene_id:146223|Hs108|chr16       ( 234) 1513 359.6   1e-99
CCDS42170.1 CMTM4 gene_id:146223|Hs108|chr16       ( 208) 1345 320.6   5e-88
CCDS2653.1 CMTM6 gene_id:54918|Hs108|chr3          ( 183)  329 84.8 4.2e-17


>>CCDS10817.1 CMTM4 gene_id:146223|Hs108|chr16            (234 aa)
 initn: 1513 init1: 1513 opt: 1513  Z-score: 1903.8  bits: 359.6 E(32554): 1e-99
Smith-Waterman score: 1513; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234)

               10        20        30        40        50        60
pF1KE3 MRSGEELDGFEGEASSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MRSGEELDGFEGEASSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 QVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 TDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWRVSVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWRVSVR
              130       140       150       160       170       180

              190       200       210       220       230    
pF1KE3 QQSTNDYIRARTESRDVDSRPEIQRLDTFSYSTNVTVRKKSPTNLLSLNHWQLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QQSTNDYIRARTESRDVDSRPEIQRLDTFSYSTNVTVRKKSPTNLLSLNHWQLA
              190       200       210       220       230    

>>CCDS42170.1 CMTM4 gene_id:146223|Hs108|chr16            (208 aa)
 initn: 1345 init1: 1345 opt: 1345  Z-score: 1693.9  bits: 320.6 E(32554): 5e-88
Smith-Waterman score: 1345; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KE3 MRSGEELDGFEGEASSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MRSGEELDGFEGEASSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 QVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 TDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWRVSVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWRVSVR
              130       140       150       160       170       180

              190       200       210       220       230    
pF1KE3 QQSTNDYIRARTESRDVDSRPEIQRLDTFSYSTNVTVRKKSPTNLLSLNHWQLA
       ::::::::::::::::::::::::::::                          
CCDS42 QQSTNDYIRARTESRDVDSRPEIQRLDT                          
              190       200                                  

>>CCDS2653.1 CMTM6 gene_id:54918|Hs108|chr3               (183 aa)
 initn: 330 init1: 310 opt: 329  Z-score: 420.5  bits: 84.8 E(32554): 4.2e-17
Smith-Waterman score: 329; 35.9% identity (65.7% similar) in 181 aa overlap (19-193:1-179)

               10        20        30          40        50        
pF1KE3 MRSGEELDGFEGEASSTSMISGASSPYQPTTE--PVSQRRGLAGLRCDPDYLRGALGR--
                         : .::   :.::::  :   :   .::     . :  : :  
CCDS26                   MENGAV--YSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRV
                                   10        20        30        40

         60        70        80        90       100       110      
pF1KE3 LKVAQVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQI
       ::  :..:.:.:::: :..  :. : :::::::::::::... ..::..   .. :.   
CCDS26 LKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTT
               50        60        70        80        90       100

        120       130       140       150       160         170    
pF1KE3 NWNLTDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYAVN--TFLAVQK
       . . .:.  :  .. .:..:::.... . :..:::::..:::.:.  . ..  :.:  ..
CCDS26 KVKSSDFYITLGTGCVFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKR
              110       120       130       140       150       160

          180       190       200       210       220       230    
pF1KE3 WRVSVRQQSTNDYIRARTESRDVDSRPEIQRLDTFSYSTNVTVRKKSPTNLLSLNHWQLA
        . ..:.  ..   .: ::                                         
CCDS26 QESQLRKPENTTRAEALTEPLNA                                     
              170       180                                        




234 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:18:32 2016 done: Sun Nov  6 05:18:33 2016
 Total Scan time:  2.240 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]