FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5249, 182 aa 1>>>pF1KE5249 182 - 182 aa - 182 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.1646+/-0.000874; mu= 19.5081+/- 0.053 mean_var=66.6949+/-14.202, 0's: 0 Z-trim(106.6): 25 B-trim: 165 in 1/48 Lambda= 0.157046 statistics sampled from 9034 (9056) to 9034 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.278), width: 16 Scan time: 1.730 The best scores are: opt bits E(32554) CCDS10777.1 PLLP gene_id:51090|Hs108|chr16 ( 182) 1190 278.0 2.2e-75 CCDS2652.1 CMTM8 gene_id:152189|Hs108|chr3 ( 173) 419 103.3 8.4e-23 >>CCDS10777.1 PLLP gene_id:51090|Hs108|chr16 (182 aa) initn: 1190 init1: 1190 opt: 1190 Z-score: 1466.7 bits: 278.0 E(32554): 2.2e-75 Smith-Waterman score: 1190; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182) 10 20 30 40 50 60 pF1KE5 MAEFPSKVSTRTSSPAQGAEASVSALRPDLGFVRSRLGALMLLQLVLGLLVWALIADTPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MAEFPSKVSTRTSSPAQGAEASVSALRPDLGFVRSRLGALMLLQLVLGLLVWALIADTPY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 HLYPAYGWVMFVAVFLWLVTIVLFNLYLFQLHMKLYMVPWPLVLMIFNISATVLYITAFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 HLYPAYGWVMFVAVFLWLVTIVLFNLYLFQLHMKLYMVPWPLVLMIFNISATVLYITAFI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 ACSAAVDLTSLRGTRPYNQRAAASFFACLVMIAYGVSAFFSYQAWRGVGSNAATSQMAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 ACSAAVDLTSLRGTRPYNQRAAASFFACLVMIAYGVSAFFSYQAWRGVGSNAATSQMAGG 130 140 150 160 170 180 pF1KE5 YA :: CCDS10 YA >>CCDS2652.1 CMTM8 gene_id:152189|Hs108|chr3 (173 aa) initn: 270 init1: 270 opt: 419 Z-score: 522.9 bits: 103.3 E(32554): 8.4e-23 Smith-Waterman score: 419; 42.8% identity (71.7% similar) in 159 aa overlap (8-166:12-168) 10 20 30 40 50 pF1KE5 MAEFPSKVSTRTSSPAQGAEASVSALRPDLGFVRSRLGALMLLQLVLGLLVWALIA :.: .:: :.. .: :.. : :.:. : :.. ..:::::::.::: CCDS26 MEEPQRARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLPGFLIVAEIVLGLLVWTLIA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 DTPYHLYPAYGWVMFVAVFLWLVTIVLFNLYLFQLHMKLYMVPWPLVLMIFNISATVLYI : : ::.::::::::: :..:. .. .:. . . .. .::: : . :: :: :::. CCDS26 GTEYFRVPAFGWVMFVAVFYWVLTVFFLIIYITMTYTRIPQVPWTTVGLCFNGSAFVLYL 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 TAFIACSAAVDLTSLRGTRPYNQRAAASFFACLVMIAYGVSAFFSYQAWRGVGSNAATSQ .: .. ...: . : .. .:. ::.:::: :: : :. ...::. ::: CCDS26 SAAVVDASSV--SPERDSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTIQ 130 140 150 160 170 180 pF1KE5 MAGGYA 182 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:52:23 2016 done: Mon Nov 7 22:52:23 2016 Total Scan time: 1.730 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]