FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4010, 163 aa
  1>>>pF1KE4010 163 - 163 aa - 163 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3656+/-0.000876; mu= 11.2002+/- 0.053
 mean_var=55.1906+/-10.823, 0's: 0 Z-trim(104.4): 17  B-trim: 0 in 0/50
 Lambda= 0.172640
 statistics sampled from 7878 (7882) to 7878 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.242), width:  16
 Scan time:  1.820

The best scores are:                                      opt bits E(32554)
CCDS10776.1 ARL2BP gene_id:23568|Hs108|chr16       ( 163) 1047 268.8 1.1e-72


>>CCDS10776.1 ARL2BP gene_id:23568|Hs108|chr16            (163 aa)
 initn: 1047 init1: 1047 opt: 1047  Z-score: 1418.5  bits: 268.8 E(32554): 1.1e-72
Smith-Waterman score: 1047; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KE4 MDALEGESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDALEGESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 IYTPIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IYTPIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLA
               70        80        90       100       110       120

              130       140       150       160   
pF1KE4 FKEMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSLPASQNNLRH
       :::::::::::::::::::::::::::::::::::::::::::
CCDS10 FKEMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSLPASQNNLRH
              130       140       150       160   




163 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:24:58 2016 done: Sun Nov  6 04:24:58 2016
 Total Scan time:  1.820 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]