FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1632, 147 aa
  1>>>pF1KE1632 147 - 147 aa - 147 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4980+/-0.00058; mu= 3.5724+/- 0.035
 mean_var=136.1176+/-27.080, 0's: 0 Z-trim(117.5): 4  B-trim: 0 in 0/53
 Lambda= 0.109930
 statistics sampled from 18283 (18285) to 18283 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.85), E-opt: 0.2 (0.562), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(32554)
CCDS10537.1 CARHSP1 gene_id:23589|Hs108|chr16      ( 147) 1029 172.8 6.9e-44
CCDS14019.1 CSDC2 gene_id:27254|Hs108|chr22        ( 153)  647 112.2 1.2e-25


>>CCDS10537.1 CARHSP1 gene_id:23589|Hs108|chr16           (147 aa)
 initn: 1029 init1: 1029 opt: 1029  Z-score: 901.3  bits: 172.8 E(32554): 6.9e-44
Smith-Waterman score: 1029; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KE1 MSSEPPPPPQPPTHQASVGLLDTPRSRERSPSPLRGNVVPSPLPTRRTRTFSATVRASQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSSEPPPPPQPPTHQASVGLLDTPRSRERSPSPLRGNVVPSPLPTRRTRTFSATVRASQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEK
               70        80        90       100       110       120

              130       140       
pF1KE1 LQAVEVVITHLAPGTKHETWSGHVISS
       :::::::::::::::::::::::::::
CCDS10 LQAVEVVITHLAPGTKHETWSGHVISS
              130       140       

>>CCDS14019.1 CSDC2 gene_id:27254|Hs108|chr22             (153 aa)
 initn: 681 init1: 599 opt: 647  Z-score: 573.7  bits: 112.2 E(32554): 1.2e-25
Smith-Waterman score: 647; 64.7% identity (79.7% similar) in 153 aa overlap (1-147:1-153)

               10         20         30            40        50    
pF1KE1 MSSEPPPPPQ-PPTHQASVGLLDT-PRSRERSPSPLRGNV----VPSPLPTRRTRTFSAT
       :.::   ::  :: :. .  .  : :  :: :    ::.:    .::::::.::::.:::
CCDS14 MTSESTSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSAT
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KE1 VRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSI
       .::: :::.::::: : ::.::::::: .:. :::.:.::.::::::::::::::::: :
CCDS14 ARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPI
               70        80        90       100       110       120

          120       130       140       
pF1KE1 PPKNEKLQAVEVVITHLAPGTKHETWSGHVISS
       ::::.:.::::::.:.::: : ::::::.:..:
CCDS14 PPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS
              130       140       150   




147 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:08:24 2016 done: Sun Nov  6 14:08:24 2016
 Total Scan time:  1.600 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]