FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4026, 234 aa 1>>>pF1KE4026 234 - 234 aa - 234 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4698+/-0.000719; mu= 13.9508+/- 0.043 mean_var=72.6495+/-14.655, 0's: 0 Z-trim(109.6): 49 B-trim: 39 in 1/52 Lambda= 0.150473 statistics sampled from 10976 (11025) to 10976 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.339), width: 16 Scan time: 1.990 The best scores are: opt bits E(32554) CCDS10475.1 KCTD5 gene_id:54442|Hs108|chr16 ( 234) 1568 349.0 1.5e-96 CCDS32728.1 KCTD2 gene_id:23510|Hs108|chr17 ( 263) 1090 245.3 2.9e-65 CCDS74855.1 KCTD17 gene_id:79734|Hs108|chr22 ( 220) 1038 233.9 6.3e-62 CCDS13940.2 KCTD17 gene_id:79734|Hs108|chr22 ( 297) 999 225.6 2.8e-59 CCDS74854.1 KCTD17 gene_id:79734|Hs108|chr22 ( 321) 999 225.6 3e-59 CCDS6048.1 KCTD9 gene_id:54793|Hs108|chr8 ( 389) 322 78.7 6.2e-15 >>CCDS10475.1 KCTD5 gene_id:54442|Hs108|chr16 (234 aa) initn: 1568 init1: 1568 opt: 1568 Z-score: 1846.7 bits: 349.0 E(32554): 1.5e-96 Smith-Waterman score: 1568; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234) 10 20 30 40 50 60 pF1KE4 MAENHCELLSPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MAENHCELLSPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 TLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 TLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 GVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 GVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWK 130 140 150 160 170 180 190 200 210 220 230 pF1KE4 FEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 FEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM 190 200 210 220 230 >>CCDS32728.1 KCTD2 gene_id:23510|Hs108|chr17 (263 aa) initn: 962 init1: 925 opt: 1090 Z-score: 1285.1 bits: 245.3 E(32554): 2.9e-65 Smith-Waterman score: 1090; 82.1% identity (94.9% similar) in 196 aa overlap (40-234:68-263) 10 20 30 40 50 60 pF1KE4 SPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQTLCRDPKSF :....:::::::::::.:::::: :.:::: CCDS32 GPTPRGHGRPAAAVAQPLEPGPGPPERAGGGGAARWVRLNVGGTYFVTTRQTLGREPKSF 40 50 60 70 80 90 70 80 90 100 110 120 pF1KE4 LYRLC-QADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEF : ::: : ::.::::::::::::::::::::::.:::::::::.:.:.:::::::::::: CCDS32 LCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPILNYLRHGKLIITKELAEEGVLEEAEF 100 110 120 130 140 150 130 140 150 160 170 180 pF1KE4 YNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIG :::.::..:::..::. ...::: ::::::::::::::::::::::::::::::::.::: CCDS32 YNIASLVRLVKERIRDNENRTSQGPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLISIG 160 170 180 190 200 210 190 200 210 220 230 pF1KE4 SSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM ::::::::::::::::::.::.:. : . :::::::::::::::: CCDS32 SSYNYGNEDQAEFLCVVSRELNNSTNGIVIEPSEKAKILQERGSRM 220 230 240 250 260 >>CCDS74855.1 KCTD17 gene_id:79734|Hs108|chr22 (220 aa) initn: 1036 init1: 844 opt: 1038 Z-score: 1225.3 bits: 233.9 E(32554): 6.3e-62 Smith-Waterman score: 1038; 75.2% identity (91.6% similar) in 202 aa overlap (33-234:20-220) 10 20 30 40 50 60 pF1KE4 ENHCELLSPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQTL :: .. :. .:::::::::: :::::::: CCDS74 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFLTTRQTL 10 20 30 40 70 80 90 100 110 120 pF1KE4 CRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGV ::. :::: ::::.. .:.::.:::::::::::::::::.::.:::::::..::.::::: CCDS74 CREQKSFLSRLCQGE-ELQSDRDETGAYLIDRDPTYFGPILNFLRHGKLVLDKDMAEEGV 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 LEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE ::::::::: ::...::...:.: ..::: :::::::::::::::::::::::::.:: CCDS74 LEEAEFYNIGPLIRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFE 110 120 130 140 150 160 190 200 210 220 230 pF1KE4 QLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM :::.::::::::.:::::::::::::::.:: : .:: :.:.:.:: ::.:: CCDS74 QLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKLLQARGTRM 170 180 190 200 210 220 >>CCDS13940.2 KCTD17 gene_id:79734|Hs108|chr22 (297 aa) initn: 1030 init1: 798 opt: 999 Z-score: 1177.6 bits: 225.6 E(32554): 2.8e-59 Smith-Waterman score: 999; 74.2% identity (90.9% similar) in 198 aa overlap (33-230:20-216) 10 20 30 40 50 60 pF1KE4 ENHCELLSPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQTL :: .. :. .:::::::::: :::::::: CCDS13 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFLTTRQTL 10 20 30 40 70 80 90 100 110 120 pF1KE4 CRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGV ::. :::: ::::.. .:.::.:::::::::::::::::.::.:::::::..::.::::: CCDS13 CREQKSFLSRLCQGE-ELQSDRDETGAYLIDRDPTYFGPILNFLRHGKLVLDKDMAEEGV 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 LEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE ::::::::: ::...::...:.: ..::: :::::::::::::::::::::::::.:: CCDS13 LEEAEFYNIGPLIRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFE 110 120 130 140 150 160 190 200 210 220 230 pF1KE4 QLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM :::.::::::::.:::::::::::::::.:: : .:: :.:.: .:. CCDS13 QLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTEEQLEEQQQQEEEVE 170 180 190 200 210 220 CCDS13 EVEVEQVQVEADAQEKGSRPHPLRPEAELAVRASPRPLARPQSCHPCCYKPEAPGCEAPD 230 240 250 260 270 280 >>CCDS74854.1 KCTD17 gene_id:79734|Hs108|chr22 (321 aa) initn: 1008 init1: 798 opt: 999 Z-score: 1177.1 bits: 225.6 E(32554): 3e-59 Smith-Waterman score: 999; 74.2% identity (90.9% similar) in 198 aa overlap (33-230:20-216) 10 20 30 40 50 60 pF1KE4 ENHCELLSPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQTL :: .. :. .:::::::::: :::::::: CCDS74 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFLTTRQTL 10 20 30 40 70 80 90 100 110 120 pF1KE4 CRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGV ::. :::: ::::.. .:.::.:::::::::::::::::.::.:::::::..::.::::: CCDS74 CREQKSFLSRLCQGE-ELQSDRDETGAYLIDRDPTYFGPILNFLRHGKLVLDKDMAEEGV 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 LEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE ::::::::: ::...::...:.: ..::: :::::::::::::::::::::::::.:: CCDS74 LEEAEFYNIGPLIRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFE 110 120 130 140 150 160 190 200 210 220 230 pF1KE4 QLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM :::.::::::::.:::::::::::::::.:: : .:: :.:.: .:. CCDS74 QLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTEEQLEEQQQQEEEVE 170 180 190 200 210 220 CCDS74 EVEVEQVQVEADAQEKAQSSQDPANLFSLPPLPPPPLPAGGSRPHPLRPEAELAVRASPR 230 240 250 260 270 280 >>CCDS6048.1 KCTD9 gene_id:54793|Hs108|chr8 (389 aa) initn: 286 init1: 210 opt: 322 Z-score: 381.6 bits: 78.7 E(32554): 6.2e-15 Smith-Waterman score: 322; 42.4% identity (68.0% similar) in 125 aa overlap (40-161:85-209) 10 20 30 40 50 60 pF1KE4 SPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQTLC-RDPKS : . :. ::::: :: :::.:: ..: : CCDS60 LIRDDDVLFVCEGEPFIDPQTDSKPPEGLLGFHTDWLTLNVGGRYFTTTRSTLVNKEPDS 60 70 80 90 100 110 70 80 90 100 110 120 pF1KE4 FLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEF .: .. . . .:. ::.::::.: :: :.:::::::.:..: . ::::::.: CCDS60 MLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARF 120 130 140 150 160 170 130 140 150 160 170 180 pF1KE4 YNITSLIKLVKDKIRERDSKTSQVPV--KHVYRVLQCQEEELTQMVSTMSDGWKFEQLVS ..: :::. .. :.. . .. :. :. : : CCDS60 FGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGADLSRLD 180 190 200 210 220 230 190 200 210 220 230 pF1KE4 IGSSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM CCDS60 LRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGASLKLCN 240 250 260 270 280 290 234 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:19:45 2016 done: Sun Nov 6 04:19:45 2016 Total Scan time: 1.990 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]