Result of FASTA (omim) for
pFN21AE3110
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3110, 281 aa
1>>>pF1KE3110 281 - 281 aa - 281 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0613+/-0.000332; mu= 17.5739+/- 0.021
mean_var=88.2819+/-17.840, 0's: 0 Z-trim(117.8): 393 B-trim: 536 in 1/52
Lambda= 0.136502
statistics sampled from 29736 (30226) to 29736 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.354), width: 16
Scan time: 7.530
The best scores are: opt bits E(85289)
NP_001027004 (OMIM: 300405) ras-related protein Ra ( 278) 1444 293.9 2.3e-79
NP_002861 (OMIM: 602672) ras-related protein Rab-1 ( 203) 496 107.0 2.9e-23
NP_057215 (OMIM: 612672) ras-related protein Rab-1 ( 200) 492 106.3 4.9e-23
NP_005361 (OMIM: 165040) ras-related protein Rab-8 ( 207) 490 105.9 6.7e-23
NP_057614 (OMIM: 613532) ras-related protein Rab-8 ( 207) 490 105.9 6.7e-23
XP_011526322 (OMIM: 165040) PREDICTED: ras-related ( 215) 490 105.9 6.8e-23
NP_004152 (OMIM: 179508) ras-related protein Rab-1 ( 205) 458 99.6 5.2e-21
NP_004209 (OMIM: 604198) ras-related protein Rab-1 ( 218) 452 98.4 1.2e-20
NP_112243 (OMIM: 612565) ras-related protein Rab-1 ( 201) 447 97.4 2.3e-20
NP_004654 (OMIM: 605570) ras-related protein Rab-1 ( 216) 444 96.8 3.7e-20
NP_006852 (OMIM: 604199) ras-related protein Rab-3 ( 201) 440 96.0 6e-20
NP_001020471 (OMIM: 616448) ras-related protein Ra ( 244) 413 90.8 2.7e-18
NP_055168 (OMIM: 605455) ras-related protein Rab-2 ( 256) 411 90.4 3.7e-18
NP_001304844 (OMIM: 612829) ras-related protein Ra ( 225) 406 89.4 6.7e-18
NP_612462 (OMIM: 612829) ras-related protein Rab-3 ( 227) 406 89.4 6.8e-18
XP_016873867 (OMIM: 612565) PREDICTED: ras-related ( 237) 406 89.4 7e-18
XP_016857447 (OMIM: 179510) PREDICTED: ras-related ( 219) 399 88.0 1.7e-17
NP_002858 (OMIM: 179510) ras-related protein Rab-3 ( 219) 399 88.0 1.7e-17
NP_004274 (OMIM: 604350) ras-related protein Rab-3 ( 219) 399 88.0 1.7e-17
NP_001193765 (OMIM: 605570) ras-related protein Ra ( 155) 397 87.4 1.8e-17
XP_011526466 (OMIM: 179490) PREDICTED: ras-related ( 220) 398 87.8 2e-17
NP_002857 (OMIM: 179490) ras-related protein Rab-3 ( 220) 398 87.8 2e-17
NP_057238 (OMIM: 612945) ras-related protein Rab-4 ( 213) 395 87.2 2.9e-17
NP_001006639 (OMIM: 609956) ras-related protein Ra ( 223) 393 86.8 3.9e-17
NP_004569 (OMIM: 179511) ras-related protein Rab-4 ( 218) 389 86.0 6.7e-17
NP_002856 (OMIM: 179509) ras-related protein Rab-2 ( 212) 387 85.6 8.6e-17
NP_057406 (OMIM: 612673) ras-related protein Rab-1 ( 215) 385 85.2 1.1e-16
NP_116235 (OMIM: 607466) ras-related protein Rab-2 ( 216) 385 85.2 1.2e-16
NP_001294982 (OMIM: 605455) ras-related protein Ra ( 190) 382 84.6 1.6e-16
NP_001317400 (OMIM: 609956) ras-related protein Ra ( 196) 377 83.6 3.2e-16
NP_065120 (OMIM: 612942) ras-related protein Rab-2 ( 213) 377 83.6 3.4e-16
NP_001157461 (OMIM: 609956) ras-related protein Ra ( 228) 377 83.7 3.6e-16
NP_001272989 (OMIM: 605693) ras-related protein Ra ( 203) 376 83.4 3.8e-16
NP_001272988 (OMIM: 605693) ras-related protein Ra ( 203) 376 83.4 3.8e-16
NP_001272990 (OMIM: 605693) ras-related protein Ra ( 203) 376 83.4 3.8e-16
NP_055303 (OMIM: 605693) ras-related protein Rab-3 ( 203) 376 83.4 3.8e-16
NP_067075 (OMIM: 602207,614222) ras-related protei ( 206) 376 83.4 3.8e-16
XP_011520750 (OMIM: 605455) PREDICTED: ras-related ( 231) 365 81.3 1.8e-15
NP_783865 (OMIM: 609956) ras-related protein Rab-3 ( 216) 364 81.1 2e-15
NP_001161078 (OMIM: 604199) ras-related protein Ra ( 152) 359 79.9 3.1e-15
NP_112586 (OMIM: 605950,615222) ras-related protei ( 229) 359 80.1 4.2e-15
XP_011530601 (OMIM: 605950,615222) PREDICTED: ras- ( 277) 359 80.2 4.8e-15
NP_001238965 (OMIM: 179514) ras-related protein Ra ( 215) 355 79.3 6.9e-15
XP_005269108 (OMIM: 179514) PREDICTED: ras-related ( 215) 355 79.3 6.9e-15
NP_002859 (OMIM: 179514) ras-related protein Rab-5 ( 215) 355 79.3 6.9e-15
XP_005269109 (OMIM: 179514) PREDICTED: ras-related ( 215) 355 79.3 6.9e-15
XP_011519340 (OMIM: 614178) PREDICTED: EF-hand cal ( 493) 359 80.5 7.1e-15
XP_011519339 (OMIM: 614178) PREDICTED: EF-hand cal ( 493) 359 80.5 7.1e-15
XP_006722363 (OMIM: 616448) PREDICTED: ras-related ( 212) 354 79.1 7.8e-15
NP_001138430 (OMIM: 614178) EF-hand calcium-bindin ( 731) 359 80.6 9.3e-15
>>NP_001027004 (OMIM: 300405) ras-related protein Rab-40 (278 aa)
initn: 1442 init1: 1327 opt: 1444 Z-score: 1545.9 bits: 293.9 E(85289): 2.3e-79
Smith-Waterman score: 1444; 73.7% identity (92.2% similar) in 281 aa overlap (1-281:1-278)
10 20 30 40 50 60
pF1KE3 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG
:.. ::: ..::.::::::::: ::::.:::::::::.:::::.. .:::::::::::::
NP_001 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYSHLGGIDYKTTTILLDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPGVP
.::::.:::::::::::::::::::::::..:::::.:::::.:.:::::.:.:::::::
NP_001 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGM
.:::::::::::::::: :::.::::. .::::::::::::.:::::::.::::.:: .
NP_001 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGRS
. . ::..:.::::::::.:::::::::.::::::....:::::::::.:.:: ::.: :
NP_001 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIALRSHLKSFSMAKGLNARMMRGLS
190 200 210 220 230 240
250 260 270 280
pF1KE3 YSLASGAGGGGSKGNSLKRSKSIRPPQSPPQNCSRSNCKIS
:::.... : .:: . : . ::::::.::.:..::::
NP_001 YSLTTSST---HKRSSLCKVKIVCPPQSPPKNCTRNSCKIS
250 260 270
>>NP_002861 (OMIM: 602672) ras-related protein Rab-13 is (203 aa)
initn: 492 init1: 350 opt: 496 Z-score: 538.7 bits: 107.0 E(85289): 2.9e-23
Smith-Waterman score: 496; 41.6% identity (70.0% similar) in 190 aa overlap (9-197:3-192)
10 20 30 40 50 60
pF1KE3 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG
:.::.:.:.::.::: ::: .. . . .. : . :::.: :. ..:
NP_002 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAP-GV
...::..:::.:: :: :: .: :::.::.::::::.. ::..:. :.: : :.: ::
NP_002 KKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHG
:.:.::. . ::.: ::: :... . :::.: ..:: :.:. :.: .:.. :
NP_002 ERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MEKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGR
.. :. : . :
NP_002 GRRSGNGNKPPSTDLKTCDKKNTNKCSLG
180 190 200
>>NP_057215 (OMIM: 612672) ras-related protein Rab-10 [H (200 aa)
initn: 444 init1: 394 opt: 492 Z-score: 534.5 bits: 106.3 E(85289): 4.9e-23
Smith-Waterman score: 492; 44.7% identity (73.5% similar) in 170 aa overlap (9-177:4-173)
10 20 30 40 50 60
pF1KE3 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG
:.:: :.:.::.::: ::: .: ..: : .. . . :::.: :. :.:
NP_057 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGV
...::..:::.:: :: :: :: :::.::.::::::: ::..:..:...::::: :
NP_057 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHG
:.:.::. . :: :: ... :... . :::.: :.:. ..: :.. .: .
NP_057 ERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MEKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGR
NP_057 VKEPNSENVDISSGGGVTGWKSKCC
180 190 200
>>NP_005361 (OMIM: 165040) ras-related protein Rab-8A [H (207 aa)
initn: 477 init1: 408 opt: 490 Z-score: 532.2 bits: 105.9 E(85289): 6.7e-23
Smith-Waterman score: 490; 47.9% identity (73.3% similar) in 165 aa overlap (9-172:3-167)
10 20 30 40 50 60
pF1KE3 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG
:.::::.:.::.::: ::: .: ... : .: . . :::.: :: :::
NP_005 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPG-V
.:.::..:::.:: :: :: .: :::.::.:::::::. :::.: ::..:.::: . :
NP_005 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHG
....::. . :::: :... : . :.:.: :.:: ..: :.:
NP_005 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MEKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGR
NP_005 KKLEGNSPQGSNQGVKITPDQQKRSSFFRCVLL
180 190 200
>>NP_057614 (OMIM: 613532) ras-related protein Rab-8B [H (207 aa)
initn: 502 init1: 400 opt: 490 Z-score: 532.2 bits: 105.9 E(85289): 6.7e-23
Smith-Waterman score: 490; 45.9% identity (72.4% similar) in 170 aa overlap (9-177:3-172)
10 20 30 40 50 60
pF1KE3 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG
:.::::.:.::.::: ::: .: ... : .. . . :::.: :: :::
NP_057 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPG-V
...::..:::.:: :: :: .: :::.::.:::::::. :::.: ::..:.::: . :
NP_057 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHG
:...::. . :::: :... : . :.:.: . :: :.: :.: .. .
NP_057 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLN
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MEKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGR
NP_057 RKMNDSNSAGAGGPVKITENRSKKTSFFRCSLL
180 190 200
>>XP_011526322 (OMIM: 165040) PREDICTED: ras-related pro (215 aa)
initn: 477 init1: 408 opt: 490 Z-score: 532.0 bits: 105.9 E(85289): 6.8e-23
Smith-Waterman score: 490; 47.9% identity (73.3% similar) in 165 aa overlap (9-172:3-167)
10 20 30 40 50 60
pF1KE3 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG
:.::::.:.::.::: ::: .: ... : .: . . :::.: :: :::
XP_011 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPG-V
.:.::..:::.:: :: :: .: :::.::.:::::::. :::.: ::..:.::: . :
XP_011 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHG
....::. . :::: :... : . :.:.: :.:: ..: :.:
XP_011 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MEKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGR
XP_011 KKLGQKDNMVCKDREPWLGEKLPRSLGQGQGWCLITAGSSS
180 190 200 210
>>NP_004152 (OMIM: 179508) ras-related protein Rab-1A is (205 aa)
initn: 498 init1: 374 opt: 458 Z-score: 498.2 bits: 99.6 E(85289): 5.2e-21
Smith-Waterman score: 458; 42.4% identity (69.4% similar) in 170 aa overlap (11-179:8-177)
10 20 30 40 50 60
pF1KE3 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG
::::.:.::.::: :::. .: . : . : . :.:.: :: :::
NP_004 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAP-GV
. .::..:::.:: :: :: :: :::.::..:::.:.. ::... .:..:::..: .:
NP_004 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHG
..::::. :. :. : :. .:.. . :.:.: :: .:: .. . : :
NP_004 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MEKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGR
NP_004 PGATAGGAEKSNVKIQSTPVKQSGGGCC
180 190 200
>>NP_004209 (OMIM: 604198) ras-related protein Rab-11B [ (218 aa)
initn: 441 init1: 312 opt: 452 Z-score: 491.4 bits: 98.4 E(85289): 1.2e-20
Smith-Waterman score: 452; 40.8% identity (70.4% similar) in 179 aa overlap (5-178:2-180)
10 20 30 40 50 60
pF1KE3 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG
:. ::::.: .:.::: :::...: . . . . :... : .: .::
NP_004 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPG-V
. .: ..:::.:: :. .: .: ::: : ::::::... ......::.::. .:: . .
NP_004 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESF----TELSRIVL
.::::. : : :::..:::.:::: ..:.:.: : . :: :.: ::. :::
NP_004 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MRHGMEKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVM
...
NP_004 QKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL
180 190 200 210
>>NP_112243 (OMIM: 612565) ras-related protein Rab-1B [H (201 aa)
initn: 461 init1: 366 opt: 447 Z-score: 486.6 bits: 97.4 E(85289): 2.3e-20
Smith-Waterman score: 447; 41.2% identity (69.4% similar) in 170 aa overlap (11-179:5-174)
10 20 30 40 50 60
pF1KE3 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG
::::.:.::.::: :::. .: . : . : . :.:.: :: :::
NP_112 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAP-GV
. .::..:::.:: :: :: :: :::.::..:::.:.. :. .. .:..:::..: .:
NP_112 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHG
..::::. :. :. : . :. .:.. . :.:.: :: ..: .. . : :
NP_112 NKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MEKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGR
NP_112 PGAASGGERPNLKIDSTPVKPAGGGCC
180 190 200
>>NP_004654 (OMIM: 605570) ras-related protein Rab-11A i (216 aa)
initn: 456 init1: 312 opt: 444 Z-score: 483.0 bits: 96.8 E(85289): 3.7e-20
Smith-Waterman score: 444; 40.2% identity (69.8% similar) in 179 aa overlap (5-178:2-180)
10 20 30 40 50 60
pF1KE3 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG
:. ::::.: .:.::: :::...: . . . . :... : .: .::
NP_004 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPG-V
. .: ..:::.:: :. .: .: ::: : ::::::... ......::.::. .:: . .
NP_004 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESF----TELSRIVL
.::::. : : :::..:::.:::: ..:.:.: : . :: .: ::. :::
NP_004 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MRHGMEKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVM
...
NP_004 QKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCCQNI
180 190 200 210
281 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:08:53 2016 done: Sun Nov 6 14:08:54 2016
Total Scan time: 7.530 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]