Result of FASTA (omim) for
pFN21AE0909
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0909, 225 aa
1>>>pF1KE0909 225 - 225 aa - 225 aa
Library: /omim/omim.rfq.tfa
64369986 residues in 92320 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9231+/-0.000263; mu= 11.0212+/- 0.016
mean_var=75.0562+/-15.260, 0's: 0 Z-trim(119.5): 15 B-trim: 187 in 1/53
Lambda= 0.148041
statistics sampled from 35018 (35033) to 35018 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.379), width: 16
Scan time: 3.580
The best scores are: opt bits E(92320)
NP_001167 (OMIM: 602844) rho GDP-dissociation inhi ( 225) 1518 332.9 2.9e-91
NP_001172006 (OMIM: 601925,615244) rho GDP-dissoci ( 204) 793 178.0 1.1e-44
NP_004300 (OMIM: 601925,615244) rho GDP-dissociati ( 204) 793 178.0 1.1e-44
NP_001308351 (OMIM: 602843) rho GDP-dissociation i ( 201) 763 171.6 9.3e-43
NP_001308349 (OMIM: 602843) rho GDP-dissociation i ( 201) 763 171.6 9.3e-43
XP_024304747 (OMIM: 602843) rho GDP-dissociation i ( 201) 763 171.6 9.3e-43
NP_001308350 (OMIM: 602843) rho GDP-dissociation i ( 201) 763 171.6 9.3e-43
NP_001166 (OMIM: 602843) rho GDP-dissociation inhi ( 201) 763 171.6 9.3e-43
NP_001308352 (OMIM: 602843) rho GDP-dissociation i ( 201) 763 171.6 9.3e-43
NP_001288170 (OMIM: 601925,615244) rho GDP-dissoci ( 235) 625 142.1 7.9e-34
NP_001288169 (OMIM: 601925,615244) rho GDP-dissoci ( 235) 625 142.1 7.9e-34
NP_001288172 (OMIM: 601925,615244) rho GDP-dissoci ( 249) 563 128.9 8.1e-30
XP_011521876 (OMIM: 601925,615244) rho GDP-dissoci ( 249) 563 128.9 8.1e-30
NP_001288171 (OMIM: 601925,615244) rho GDP-dissoci ( 337) 491 113.6 4.5e-25
NP_001172007 (OMIM: 601925,615244) rho GDP-dissoci ( 160) 456 106.0 4.1e-23
>>NP_001167 (OMIM: 602844) rho GDP-dissociation inhibito (225 aa)
initn: 1518 init1: 1518 opt: 1518 Z-score: 1760.0 bits: 332.9 E(92320): 2.9e-91
Smith-Waterman score: 1518; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)
10 20 30 40 50 60
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLGLDACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 QLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFV
130 140 150 160 170 180
190 200 210 220
pF1KE0 TPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
190 200 210 220
>>NP_001172006 (OMIM: 601925,615244) rho GDP-dissociatio (204 aa)
initn: 792 init1: 792 opt: 793 Z-score: 923.8 bits: 178.0 E(92320): 1.1e-44
Smith-Waterman score: 793; 61.1% identity (83.2% similar) in 190 aa overlap (36-225:15-204)
10 20 30 40 50 60
pF1KE0 ACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIRQLDPD
:... :: .:. :..::. ::..:: :
NP_001 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKD
10 20 30 40
70 80 90 100 110 120
pF1KE0 DRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKDQVFVL
:.:: :::..::: . ..::..::: :: :::. .::::. .:::::: .: : :::
NP_001 DESLRKYKEALLGRVAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVL
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 KEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFVTPVEE
::::.::.::::.:.::::::.: ..::::.:...::: :::::::: :.::::.:::::
NP_001 KEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEE
110 120 130 140 150 160
190 200 210 220
pF1KE0 APRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
::.: :.:: : . : :::::.: ::::::.: : .::::
NP_001 APKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWKD
170 180 190 200
>>NP_004300 (OMIM: 601925,615244) rho GDP-dissociation i (204 aa)
initn: 792 init1: 792 opt: 793 Z-score: 923.8 bits: 178.0 E(92320): 1.1e-44
Smith-Waterman score: 793; 61.1% identity (83.2% similar) in 190 aa overlap (36-225:15-204)
10 20 30 40 50 60
pF1KE0 ACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIRQLDPD
:... :: .:. :..::. ::..:: :
NP_004 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKD
10 20 30 40
70 80 90 100 110 120
pF1KE0 DRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKDQVFVL
:.:: :::..::: . ..::..::: :: :::. .::::. .:::::: .: : :::
NP_004 DESLRKYKEALLGRVAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVL
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 KEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFVTPVEE
::::.::.::::.:.::::::.: ..::::.:...::: :::::::: :.::::.:::::
NP_004 KEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEE
110 120 130 140 150 160
190 200 210 220
pF1KE0 APRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
::.: :.:: : . : :::::.: ::::::.: : .::::
NP_004 APKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWKD
170 180 190 200
>>NP_001308351 (OMIM: 602843) rho GDP-dissociation inhib (201 aa)
initn: 757 init1: 736 opt: 763 Z-score: 889.3 bits: 171.6 E(92320): 9.3e-43
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (31-225:3-201)
10 20 30 40 50
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
: .: : :.: :. . .:. : .:::
NP_001 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
10 20 30
60 70 80 90 100 110
pF1KE0 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
:....: ::.:: :::..::: : ..::. ::: ::::::. :.::::..:::::::
NP_001 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE0 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
.:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...::::::: .:
NP_001 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
100 110 120 130 140 150
180 190 200 210 220
pF1KE0 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
:::.:::::::.: :.:: : :.:::::. ::::::.: : ..: .
NP_001 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
160 170 180 190 200
>>NP_001308349 (OMIM: 602843) rho GDP-dissociation inhib (201 aa)
initn: 757 init1: 736 opt: 763 Z-score: 889.3 bits: 171.6 E(92320): 9.3e-43
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (31-225:3-201)
10 20 30 40 50
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
: .: : :.: :. . .:. : .:::
NP_001 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
10 20 30
60 70 80 90 100 110
pF1KE0 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
:....: ::.:: :::..::: : ..::. ::: ::::::. :.::::..:::::::
NP_001 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE0 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
.:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...::::::: .:
NP_001 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
100 110 120 130 140 150
180 190 200 210 220
pF1KE0 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
:::.:::::::.: :.:: : :.:::::. ::::::.: : ..: .
NP_001 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
160 170 180 190 200
>>XP_024304747 (OMIM: 602843) rho GDP-dissociation inhib (201 aa)
initn: 757 init1: 736 opt: 763 Z-score: 889.3 bits: 171.6 E(92320): 9.3e-43
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (31-225:3-201)
10 20 30 40 50
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
: .: : :.: :. . .:. : .:::
XP_024 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
10 20 30
60 70 80 90 100 110
pF1KE0 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
:....: ::.:: :::..::: : ..::. ::: ::::::. :.::::..:::::::
XP_024 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE0 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
.:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...::::::: .:
XP_024 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
100 110 120 130 140 150
180 190 200 210 220
pF1KE0 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
:::.:::::::.: :.:: : :.:::::. ::::::.: : ..: .
XP_024 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
160 170 180 190 200
>>NP_001308350 (OMIM: 602843) rho GDP-dissociation inhib (201 aa)
initn: 757 init1: 736 opt: 763 Z-score: 889.3 bits: 171.6 E(92320): 9.3e-43
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (31-225:3-201)
10 20 30 40 50
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
: .: : :.: :. . .:. : .:::
NP_001 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
10 20 30
60 70 80 90 100 110
pF1KE0 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
:....: ::.:: :::..::: : ..::. ::: ::::::. :.::::..:::::::
NP_001 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE0 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
.:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...::::::: .:
NP_001 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
100 110 120 130 140 150
180 190 200 210 220
pF1KE0 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
:::.:::::::.: :.:: : :.:::::. ::::::.: : ..: .
NP_001 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
160 170 180 190 200
>>NP_001166 (OMIM: 602843) rho GDP-dissociation inhibito (201 aa)
initn: 757 init1: 736 opt: 763 Z-score: 889.3 bits: 171.6 E(92320): 9.3e-43
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (31-225:3-201)
10 20 30 40 50
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
: .: : :.: :. . .:. : .:::
NP_001 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
10 20 30
60 70 80 90 100 110
pF1KE0 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
:....: ::.:: :::..::: : ..::. ::: ::::::. :.::::..:::::::
NP_001 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE0 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
.:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...::::::: .:
NP_001 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
100 110 120 130 140 150
180 190 200 210 220
pF1KE0 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
:::.:::::::.: :.:: : :.:::::. ::::::.: : ..: .
NP_001 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
160 170 180 190 200
>>NP_001308352 (OMIM: 602843) rho GDP-dissociation inhib (201 aa)
initn: 757 init1: 736 opt: 763 Z-score: 889.3 bits: 171.6 E(92320): 9.3e-43
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (31-225:3-201)
10 20 30 40 50
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
: .: : :.: :. . .:. : .:::
NP_001 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
10 20 30
60 70 80 90 100 110
pF1KE0 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
:....: ::.:: :::..::: : ..::. ::: ::::::. :.::::..:::::::
NP_001 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE0 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
.:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...::::::: .:
NP_001 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
100 110 120 130 140 150
180 190 200 210 220
pF1KE0 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
:::.:::::::.: :.:: : :.:::::. ::::::.: : ..: .
NP_001 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
160 170 180 190 200
>>NP_001288170 (OMIM: 601925,615244) rho GDP-dissociatio (235 aa)
initn: 624 init1: 624 opt: 625 Z-score: 728.9 bits: 142.1 E(92320): 7.9e-34
Smith-Waterman score: 625; 59.6% identity (84.6% similar) in 156 aa overlap (36-191:15-170)
10 20 30 40 50 60
pF1KE0 ACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIRQLDPD
:... :: .:. :..::. ::..:: :
NP_001 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKD
10 20 30 40
70 80 90 100 110 120
pF1KE0 DRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKDQVFVL
:.:: :::..::: . ..::..::: :: :::. .::::. .:::::: .: : :::
NP_001 DESLRKYKEALLGRVAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVL
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 KEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFVTPVEE
::::.::.::::.:.::::::.: ..::::.:...::: :::::::: :.::::.:::::
NP_001 KEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEE
110 120 130 140 150 160
190 200 210 220
pF1KE0 APRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
::.:..
NP_001 APKGSISPSHPRPGFRRERSSHSPGPVVAPGRVRLLLRGGAGVWDARPRGGRAVLQPRCS
170 180 190 200 210 220
225 residues in 1 query sequences
64369986 residues in 92320 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Oct 24 21:45:55 2019 done: Thu Oct 24 21:45:56 2019
Total Scan time: 3.580 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]