FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0909, 225 aa
  1>>>pF1KE0909     225 - 225 aa - 225 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8931+/-0.000608; mu= 11.3796+/- 0.036
 mean_var=72.5087+/-14.776, 0's: 0 Z-trim(112.3): 9  B-trim: 451 in 1/52
 Lambda= 0.150619
 statistics sampled from 13228 (13234) to 13228 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.396), width:  16
 Scan time:  1.140

The best scores are:                                      opt bits E(33420)
CCDS10404.1 ARHGDIG gene_id:398|Hs109|chr16        ( 225) 1518 338.2 2.5e-93
CCDS11788.1 ARHGDIA gene_id:396|Hs109|chr17        ( 204)  793 180.7 6.2e-46
CCDS8671.1 ARHGDIB gene_id:397|Hs109|chr12         ( 201)  763 174.2 5.6e-44
CCDS77133.1 ARHGDIA gene_id:396|Hs109|chr17        ( 235)  625 144.2 6.9e-35
CCDS58609.1 ARHGDIA gene_id:396|Hs109|chr17        ( 160)  456 107.4 5.5e-24


>>CCDS10404.1 ARHGDIG gene_id:398|Hs109|chr16             (225 aa)
 initn: 1518 init1: 1518 opt: 1518  Z-score: 1789.1  bits: 338.2 E(33420): 2.5e-93
Smith-Waterman score: 1518; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLGLDACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFV
              130       140       150       160       170       180

              190       200       210       220     
pF1KE0 TPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
              190       200       210       220     

>>CCDS11788.1 ARHGDIA gene_id:396|Hs109|chr17             (204 aa)
 initn: 792 init1: 792 opt: 793  Z-score: 938.3  bits: 180.7 E(33420): 6.2e-46
Smith-Waterman score: 793; 61.1% identity (83.2% similar) in 190 aa overlap (36-225:15-204)

          10        20        30        40        50        60     
pF1KE0 ACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIRQLDPD
                                     :...  ::   .:. :..::. ::..:: :
CCDS11                 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKD
                               10        20        30        40    

          70        80        90       100       110       120     
pF1KE0 DRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKDQVFVL
       :.:: :::..::: .  ..::..::: :: :::.  .::::. .::::::  .: : :::
CCDS11 DESLRKYKEALLGRVAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVL
           50        60        70        80        90       100    

         130       140       150       160       170       180     
pF1KE0 KEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFVTPVEE
       ::::.::.::::.:.::::::.: ..::::.:...::: :::::::: :.::::.:::::
CCDS11 KEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEE
          110       120       130       140       150       160    

         190       200       210       220     
pF1KE0 APRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
       ::.: :.:: : . : :::::.: ::::::.: : .::::
CCDS11 APKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWKD
          170       180       190       200    

>>CCDS8671.1 ARHGDIB gene_id:397|Hs109|chr12              (201 aa)
 initn: 757 init1: 736 opt: 763  Z-score: 903.2  bits: 174.2 E(33420): 5.6e-44
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (31-225:3-201)

               10        20        30         40           50      
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
                                     : .: : :.:  :. .    .:. : .:::
CCDS86                             MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
                                           10        20        30  

         60        70        80        90       100       110      
pF1KE0 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
        :....: ::.:: :::..:::  : ..::. ::: ::::::. :.::::..::::::: 
CCDS86 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
             40        50        60        70        80        90  

        120       130       140       150       160       170      
pF1KE0 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
       .:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...:::::::  .:
CCDS86 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
            100       110       120       130       140       150  

        180       190       200       210       220     
pF1KE0 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
       :::.:::::::.: :.:: :   :.:::::.  ::::::.: : ..: .
CCDS86 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
            160       170       180       190       200 

>>CCDS77133.1 ARHGDIA gene_id:396|Hs109|chr17             (235 aa)
 initn: 624 init1: 624 opt: 625  Z-score: 740.1  bits: 144.2 E(33420): 6.9e-35
Smith-Waterman score: 625; 59.6% identity (84.6% similar) in 156 aa overlap (36-191:15-170)

          10        20        30        40        50        60     
pF1KE0 ACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIRQLDPD
                                     :...  ::   .:. :..::. ::..:: :
CCDS77                 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKD
                               10        20        30        40    

          70        80        90       100       110       120     
pF1KE0 DRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKDQVFVL
       :.:: :::..::: .  ..::..::: :: :::.  .::::. .::::::  .: : :::
CCDS77 DESLRKYKEALLGRVAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVL
           50        60        70        80        90       100    

         130       140       150       160       170       180     
pF1KE0 KEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFVTPVEE
       ::::.::.::::.:.::::::.: ..::::.:...::: :::::::: :.::::.:::::
CCDS77 KEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEE
          110       120       130       140       150       160    

         190       200       210       220                         
pF1KE0 APRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD                    
       ::.:..                                                      
CCDS77 APKGSISPSHPRPGFRRERSSHSPGPVVAPGRVRLLLRGGAGVWDARPRGGRAVLQPRCS
          170       180       190       200       210       220    

>>CCDS58609.1 ARHGDIA gene_id:396|Hs109|chr17             (160 aa)
 initn: 455 init1: 455 opt: 456  Z-score: 544.2  bits: 107.4 E(33420): 5.5e-24
Smith-Waterman score: 479; 44.2% identity (63.7% similar) in 190 aa overlap (36-225:15-160)

          10        20        30        40        50        60     
pF1KE0 ACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIRQLDPD
                                     :...  ::   .:. :..::. ::..:: :
CCDS58                 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKD
                               10        20        30        40    

          70        80        90       100       110       120     
pF1KE0 DRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKDQVFVL
       :.:: :::..::: .  ..::..::: :: :::.  .::::. .::::::  .: : :::
CCDS58 DESLRKYKEALLGRVAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVL
           50        60        70        80        90       100    

         130       140       150       160       170       180     
pF1KE0 KEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFVTPVEE
       ::::.::.::::.:.::::::.: ..::::.:..                          
CCDS58 KEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVK--------------------------
          110       120       130                                  

         190       200       210       220     
pF1KE0 APRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
                         .::.: ::::::.: : .::::
CCDS58 ------------------NDDKTDHLSWEWNLTIKKDWKD
                        140       150       160




225 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:45:55 2019 done: Thu Oct 24 21:45:55 2019
 Total Scan time:  1.140 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]