FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3677, 268 aa 1>>>pF1KE3677 268 - 268 aa - 268 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.9767+/-0.000273; mu= 5.6989+/- 0.017 mean_var=200.8772+/-39.417, 0's: 0 Z-trim(125.8): 24 B-trim: 0 in 0/60 Lambda= 0.090492 statistics sampled from 50217 (50250) to 50217 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.855), E-opt: 0.2 (0.589), width: 16 Scan time: 7.870 The best scores are: opt bits E(85289) NP_061140 (OMIM: 608689) mesoderm posterior protei ( 268) 1889 257.8 1.5e-68 NP_001035047 (OMIM: 277300,605195,608681) mesoderm ( 397) 702 103.0 9.2e-22 NP_001099039 (OMIM: 612209) mesogenin-1 [Homo sapi ( 193) 241 42.5 0.00071 >>NP_061140 (OMIM: 608689) mesoderm posterior protein 1 (268 aa) initn: 1889 init1: 1889 opt: 1889 Z-score: 1351.4 bits: 257.8 E(85289): 1.5e-68 Smith-Waterman score: 1889; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268) 10 20 30 40 50 60 pF1KE3 MAQPLCPPLSESWMLSAAWGPTRRPPPSDKDCGRSLVSSPDSWGSTPADSPVASPARPGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 MAQPLCPPLSESWMLSAAWGPTRRPPPSDKDCGRSLVSSPDSWGSTPADSPVASPARPGT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LRDPRAPSVGRRGARSSRLGSGQRQSASEREKLRMRTLARALHELRRFLPPSVAPAGQSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 LRDPRAPSVGRRGARSSRLGSGQRQSASEREKLRMRTLARALHELRRFLPPSVAPAGQSL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 TKIETLRLAIRYIGHLSAVLGLSEESLQRRCRQRGDAGSPRGCPLCPDDCPAQMQTRTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 TKIETLRLAIRYIGHLSAVLGLSEESLQRRCRQRGDAGSPRGCPLCPDDCPAQMQTRTQA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EGQGQGRGLGLVSAVRAGASWGSPPACPGARAAPEPRDPPALFAEAACPEGQAMEPSPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 EGQGQGRGLGLVSAVRAGASWGSPPACPGARAAPEPRDPPALFAEAACPEGQAMEPSPPS 190 200 210 220 230 240 250 260 pF1KE3 PLLPGDVLALLETWMPLSPLEWLPEEPK :::::::::::::::::::::::::::: NP_061 PLLPGDVLALLETWMPLSPLEWLPEEPK 250 260 >>NP_001035047 (OMIM: 277300,605195,608681) mesoderm pos (397 aa) initn: 720 init1: 620 opt: 702 Z-score: 511.7 bits: 103.0 E(85289): 9.2e-22 Smith-Waterman score: 794; 52.1% identity (62.7% similar) in 303 aa overlap (1-268:1-286) 10 20 30 40 50 pF1KE3 MAQ-PLCPPLS----ESWMLSAAWGPTRRPPPSDKDCGRSLVSSPDSWGSTPADSP--VA ::: : :: : . :... .:: . . : . : .:: :: :: : :. . NP_001 MAQSP--PPQSLLGHDHWIFAQGWGWA-----GHWD-STSPASSSDSSGSCPCDGARGLP 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 SPARPG-TLRDPRAPSVGRRGARSSRLGSGQRQSASEREKLRMRTLARALHELRRFLPPS .: :. . : .: .. : ::.. : ::::::::::::::::::::::::::::::: NP_001 QPQPPSCSSRAAEAAATTPRRARTGPAG-GQRQSASEREKLRMRTLARALHELRRFLPPS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 VAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQRRCRQRGDAGSPRGCPLCPDDCPA .::::::::::::::::::::::::::::::::::: : ::::::::: ::::::: :: NP_001 LAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPA 120 130 140 150 160 170 180 190 200 210 pF1KE3 QMQTRTQAEGQGQGRGLG--------------------LVSAVRAGASWGSPPACPGARA . ::.....:::::.: : ::::: : :::::: :::::.: NP_001 EAQTQAEGQGQGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQA 180 190 200 210 220 230 220 230 240 250 260 pF1KE3 APE-------PRDPPALFAEAACPEGQAMEPSPPSPLLPGDVLALLETWMPLSPLEWLPE ::: :: : . ::. : ::: : : : : . : NP_001 APERLGRGVHDTDPWA--TPPYCPKIQ----SPPYSSQGTTSDASL--WTPPQGCPWTQS 240 250 260 270 280 pF1KE3 EPK :. NP_001 SPEPRNPPVPWTAAPATLELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCW 290 300 310 320 330 340 >>NP_001099039 (OMIM: 612209) mesogenin-1 [Homo sapiens] (193 aa) initn: 261 init1: 220 opt: 241 Z-score: 190.5 bits: 42.5 E(85289): 0.00071 Smith-Waterman score: 241; 47.2% identity (76.4% similar) in 89 aa overlap (57-145:101-187) 30 40 50 60 70 80 pF1KE3 PSDKDCGRSLVSSPDSWGSTPADSPVASPARPGTLRDPRAPSVGRRGARSSRLGSGQRQS .: :. .:.. ..:.. :.. .:.. NP_001 HGGASSGGSEGCSVGGASGLVEVDYNMLAFQPTHLQGGGGPKA-QKGTKV-RMSVQRRRK 80 90 100 110 120 90 100 110 120 130 140 pF1KE3 ASEREKLRMRTLARALHELRRFLPPSVAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEES ::::::::::::: ::: :: .::: . :: ::::.::. .:.:::.:. .:. ..: NP_001 ASEREKLRMRTLADALHTLRNYLPPVYSQRGQPLTKIQTLKYTIKYIGELTDLLNRGREP 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE3 LQRRCRQRGDAGSPRGCPLCPDDCPAQMQTRTQAEGQGQGRGLGLVSAVRAGASWGSPPA NP_001 RAQSA 190 268 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:10:01 2016 done: Sun Nov 6 14:10:02 2016 Total Scan time: 7.870 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]