FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3677, 268 aa
  1>>>pF1KE3677 268 - 268 aa - 268 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4756+/-0.000705; mu= 8.8601+/- 0.043
 mean_var=193.4639+/-38.625, 0's: 0 Z-trim(118.2): 29  B-trim: 171 in 1/51
 Lambda= 0.092209
 statistics sampled from 19053 (19082) to 19053 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.857), E-opt: 0.2 (0.586), width:  16
 Scan time:  3.050

The best scores are:                                      opt bits E(32554)
CCDS10355.1 MESP1 gene_id:55897|Hs108|chr15        ( 268) 1889 262.3 2.6e-70
CCDS42078.1 MESP2 gene_id:145873|Hs108|chr15       ( 397)  702 104.6 1.2e-22


>>CCDS10355.1 MESP1 gene_id:55897|Hs108|chr15             (268 aa)
 initn: 1889 init1: 1889 opt: 1889  Z-score: 1375.8  bits: 262.3 E(32554): 2.6e-70
Smith-Waterman score: 1889; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)

               10        20        30        40        50        60
pF1KE3 MAQPLCPPLSESWMLSAAWGPTRRPPPSDKDCGRSLVSSPDSWGSTPADSPVASPARPGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAQPLCPPLSESWMLSAAWGPTRRPPPSDKDCGRSLVSSPDSWGSTPADSPVASPARPGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LRDPRAPSVGRRGARSSRLGSGQRQSASEREKLRMRTLARALHELRRFLPPSVAPAGQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LRDPRAPSVGRRGARSSRLGSGQRQSASEREKLRMRTLARALHELRRFLPPSVAPAGQSL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 TKIETLRLAIRYIGHLSAVLGLSEESLQRRCRQRGDAGSPRGCPLCPDDCPAQMQTRTQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TKIETLRLAIRYIGHLSAVLGLSEESLQRRCRQRGDAGSPRGCPLCPDDCPAQMQTRTQA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 EGQGQGRGLGLVSAVRAGASWGSPPACPGARAAPEPRDPPALFAEAACPEGQAMEPSPPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EGQGQGRGLGLVSAVRAGASWGSPPACPGARAAPEPRDPPALFAEAACPEGQAMEPSPPS
              190       200       210       220       230       240

              250       260        
pF1KE3 PLLPGDVLALLETWMPLSPLEWLPEEPK
       ::::::::::::::::::::::::::::
CCDS10 PLLPGDVLALLETWMPLSPLEWLPEEPK
              250       260        

>>CCDS42078.1 MESP2 gene_id:145873|Hs108|chr15            (397 aa)
 initn: 720 init1: 620 opt: 702  Z-score: 520.3  bits: 104.6 E(32554): 1.2e-22
Smith-Waterman score: 794; 52.1% identity (62.7% similar) in 303 aa overlap (1-268:1-286)

                10            20        30        40        50     
pF1KE3 MAQ-PLCPPLS----ESWMLSAAWGPTRRPPPSDKDCGRSLVSSPDSWGSTPADSP--VA
       ::: :  :: :    . :... .:: .     .  : . : .:: :: :: : :.   . 
CCDS42 MAQSP--PPQSLLGHDHWIFAQGWGWA-----GHWD-STSPASSSDSSGSCPCDGARGLP
                 10        20              30        40        50  

             60        70        80        90       100       110  
pF1KE3 SPARPG-TLRDPRAPSVGRRGARSSRLGSGQRQSASEREKLRMRTLARALHELRRFLPPS
       .:  :. . :  .: ..  : ::..  : :::::::::::::::::::::::::::::::
CCDS42 QPQPPSCSSRAAEAAATTPRRARTGPAG-GQRQSASEREKLRMRTLARALHELRRFLPPS
             60        70        80         90       100       110 

            120       130       140       150       160       170  
pF1KE3 VAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQRRCRQRGDAGSPRGCPLCPDDCPA
       .::::::::::::::::::::::::::::::::::: : ::::::::: :::::::  ::
CCDS42 LAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPA
             120       130       140       150       160       170 

            180       190                           200       210  
pF1KE3 QMQTRTQAEGQGQGRGLG--------------------LVSAVRAGASWGSPPACPGARA
       . ::.....:::::.: :                    ::::: : :::::: :::::.:
CCDS42 EAQTQAEGQGQGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQA
             180       190       200       210       220       230 

                   220       230       240       250       260     
pF1KE3 APE-------PRDPPALFAEAACPEGQAMEPSPPSPLLPGDVLALLETWMPLSPLEWLPE
       :::         :: :  .   ::. :    :::         : :  : : .   :   
CCDS42 APERLGRGVHDTDPWA--TPPYCPKIQ----SPPYSSQGTTSDASL--WTPPQGCPWTQS
             240         250           260       270         280   

                                                                   
pF1KE3 EPK                                                         
        :.                                                         
CCDS42 SPEPRNPPVPWTAAPATLELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCW
           290       300       310       320       330       340   




268 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:10:00 2016 done: Sun Nov  6 14:10:01 2016
 Total Scan time:  3.050 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]