FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5130, 150 aa
  1>>>pF1KE5130 150 - 150 aa - 150 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3849+/-0.00059; mu= 13.7942+/- 0.036
 mean_var=89.0071+/-17.507, 0's: 0 Z-trim(114.9): 75  B-trim: 130 in 1/52
 Lambda= 0.135945
 statistics sampled from 15373 (15449) to 15373 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.475), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS32316.1 ZSCAN2 gene_id:54993|Hs108|chr15       ( 150)  976 199.8 5.3e-52
CCDS32315.1 ZSCAN2 gene_id:54993|Hs108|chr15       ( 146)  905 185.9 8.1e-48
CCDS10329.2 ZSCAN2 gene_id:54993|Hs108|chr15       ( 614)  901 185.6   4e-47


>>CCDS32316.1 ZSCAN2 gene_id:54993|Hs108|chr15            (150 aa)
 initn: 976 init1: 976 opt: 976  Z-score: 1047.1  bits: 199.8 E(32554): 5.3e-52
Smith-Waterman score: 976; 99.3% identity (99.3% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KE5 MMAADIPRVTTPLSSLVQVPQEEDRQEEEVTTMILEDDSWVQEAVLQEDGPESEPFPQSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MMAADIPRVTTPLSSLVQVPQEEDRQEEEVTTMILEDDSWVQEAVLQEDGPESEPFPQSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 GKGGPQEEVTRGPQGALGRLRELCRRWLRPEVHTKEQMLTMLPKEIQAWLQEHRPESSEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GKGGPQEEVTRGPQGALGRLRELCRRWLRPEVHTKEQMLTMLPKEIQAWLQEHRPESSEE
               70        80        90       100       110       120

              130       140       150
pF1KE5 AAALVEDLTQTLQDSAVAVFASLPVEVTSL
       ::::::::::::::::::: ::::::::::
CCDS32 AAALVEDLTQTLQDSAVAVVASLPVEVTSL
              130       140       150

>>CCDS32315.1 ZSCAN2 gene_id:54993|Hs108|chr15            (146 aa)
 initn: 945 init1: 905 opt: 905  Z-score: 972.0  bits: 185.9 E(32554): 8.1e-48
Smith-Waterman score: 905; 98.6% identity (99.3% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KE5 MMAADIPRVTTPLSSLVQVPQEEDRQEEEVTTMILEDDSWVQEAVLQEDGPESEPFPQSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MMAADIPRVTTPLSSLVQVPQEEDRQEEEVTTMILEDDSWVQEAVLQEDGPESEPFPQSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 GKGGPQEEVTRGPQGALGRLRELCRRWLRPEVHTKEQMLTMLPKEIQAWLQEHRPESSEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GKGGPQEEVTRGPQGALGRLRELCRRWLRPEVHTKEQMLTMLPKEIQAWLQEHRPESSEE
               70        80        90       100       110       120

              130       140       150
pF1KE5 AAALVEDLTQTLQDSAVAVFASLPVEVTSL
       ::::::::::::::: .:            
CCDS32 AAALVEDLTQTLQDSETASCVHGCPV    
              130       140          

>>CCDS10329.2 ZSCAN2 gene_id:54993|Hs108|chr15            (614 aa)
 initn: 901 init1: 901 opt: 901  Z-score: 959.6  bits: 185.6 E(32554): 4e-47
Smith-Waterman score: 901; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135)

               10        20        30        40        50        60
pF1KE5 MMAADIPRVTTPLSSLVQVPQEEDRQEEEVTTMILEDDSWVQEAVLQEDGPESEPFPQSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MMAADIPRVTTPLSSLVQVPQEEDRQEEEVTTMILEDDSWVQEAVLQEDGPESEPFPQSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 GKGGPQEEVTRGPQGALGRLRELCRRWLRPEVHTKEQMLTMLPKEIQAWLQEHRPESSEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GKGGPQEEVTRGPQGALGRLRELCRRWLRPEVHTKEQMLTMLPKEIQAWLQEHRPESSEE
               70        80        90       100       110       120

              130       140       150                              
pF1KE5 AAALVEDLTQTLQDSAVAVFASLPVEVTSL                              
       :::::::::::::::                                             
CCDS10 AAALVEDLTQTLQDSDFEIQSENGENCNQDMFENESRKIFSEMPEGESAQHSDGESDFER
              130       140       150       160       170       180




150 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:39:57 2016 done: Mon Nov  7 21:39:57 2016
 Total Scan time:  2.090 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]