FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3961, 208 aa
  1>>>pF1KE3961 208 - 208 aa - 208 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6912+/-0.000772; mu= 4.2967+/- 0.047
 mean_var=138.9298+/-27.677, 0's: 0 Z-trim(113.0): 10  B-trim: 0 in 0/53
 Lambda= 0.108812
 statistics sampled from 13649 (13658) to 13649 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.42), width:  16
 Scan time:  2.070

The best scores are:                                      opt bits E(32554)
CCDS10313.1 ZFAND6 gene_id:54469|Hs108|chr15       ( 208) 1398 229.8 9.2e-61
CCDS58395.1 ZFAND6 gene_id:54469|Hs108|chr15       ( 196)  969 162.5 1.6e-40
CCDS6642.1 ZFAND5 gene_id:7763|Hs108|chr9          ( 213)  783 133.3 1.1e-31


>>CCDS10313.1 ZFAND6 gene_id:54469|Hs108|chr15            (208 aa)
 initn: 1398 init1: 1398 opt: 1398  Z-score: 1204.4  bits: 229.8 E(32554): 9.2e-61
Smith-Waterman score: 1398; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KE3 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
              130       140       150       160       170       180

              190       200        
pF1KE3 CSYNYKADAAEKIRKENPVVVGEKIQKI
       ::::::::::::::::::::::::::::
CCDS10 CSYNYKADAAEKIRKENPVVVGEKIQKI
              190       200        

>>CCDS58395.1 ZFAND6 gene_id:54469|Hs108|chr15            (196 aa)
 initn: 969 init1: 969 opt: 969  Z-score: 840.8  bits: 162.5 E(32554): 1.6e-40
Smith-Waterman score: 1298; 94.2% identity (94.2% similar) in 208 aa overlap (1-208:1-196)

               10        20        30        40        50        60
pF1KE3 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSE
       :::::::::::::::::::::::::::::::::::::::::::::::::::         
CCDS58 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPP---------
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE3 SLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDV
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ---VQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDV
                 60        70        80        90       100        

              130       140       150       160       170       180
pF1KE3 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
      110       120       130       140       150       160        

              190       200        
pF1KE3 CSYNYKADAAEKIRKENPVVVGEKIQKI
       ::::::::::::::::::::::::::::
CCDS58 CSYNYKADAAEKIRKENPVVVGEKIQKI
      170       180       190      

>>CCDS6642.1 ZFAND5 gene_id:7763|Hs108|chr9               (213 aa)
 initn: 830 init1: 415 opt: 783  Z-score: 682.4  bits: 133.3 E(32554): 1.1e-31
Smith-Waterman score: 783; 58.5% identity (76.5% similar) in 217 aa overlap (1-208:1-213)

               10        20        30        40        50          
pF1KE3 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAT---SVSS
       ::::::..  :::::::::::::::::::::::::::::::..: ::.:: .:   : : 
CCDS66 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP
               10        20        30        40         50         

        60        70        80        90           100       110   
pF1KE3 LSESLPVQCTDGSVPEAQSALDSTSSSMQPSPVS----NQSLLSESVASSQLDSTSVDKA
        :.:  :: .: :. . ..:  ::: . .  ::.    .:..   :.  :. :. .. :.
CCDS66 TSDSASVQRADTSLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSI--SREDKITTPKT
      60        70        80        90       100         110       

           120       130         140       150       160       170 
pF1KE3 VPETEDVQASVSDTAQQPSEEQS--KSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCG
          .: : .. : ...:::  ::  :. : :: :::::::::::::::::.:::::..::
CCDS66 -EVSEPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCG
        120       130       140       150       160       170      

             180       190       200        
pF1KE3 VHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI
       .::::: ::: :.:::.:: ::::::::::.::::.:
CCDS66 LHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI
        180       190       200       210   




208 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:32:37 2016 done: Sun Nov  6 08:32:38 2016
 Total Scan time:  2.070 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]