Result of FASTA (ccds) for
pFN21AB7612
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7612, 359 aa
1>>>pF1KB7612 359 - 359 aa - 359 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1814+/-0.000919; mu= 11.1434+/- 0.056
mean_var=241.7708+/-53.143, 0's: 0 Z-trim(113.1): 117 B-trim: 8 in 1/51
Lambda= 0.082484
statistics sampled from 13645 (13763) to 13645 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.423), width: 16
Scan time: 2.460
The best scores are: opt bits E(32554)
CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 ( 359) 2478 307.6 1.1e-83
CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 ( 349) 1872 235.4 5.4e-62
CCDS55343.1 LMX1B gene_id:4010|Hs108|chr9 ( 406) 638 88.7 9.5e-18
CCDS6866.2 LMX1B gene_id:4010|Hs108|chr9 ( 395) 621 86.7 3.8e-17
CCDS55342.1 LMX1B gene_id:4010|Hs108|chr9 ( 402) 620 86.5 4.2e-17
CCDS1247.1 LMX1A gene_id:4009|Hs108|chr1 ( 382) 612 85.6 7.8e-17
CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 ( 388) 514 73.9 2.6e-13
CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 ( 397) 514 73.9 2.6e-13
CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9 ( 406) 461 67.6 2.1e-11
CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 ( 402) 458 67.3 2.6e-11
CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 ( 397) 457 67.1 2.9e-11
>>CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 (359 aa)
initn: 2478 init1: 2478 opt: 2478 Z-score: 1616.0 bits: 307.6 E(32554): 1.1e-83
Smith-Waterman score: 2478; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)
10 20 30 40 50 60
pF1KB7 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 YLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 RPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NKRCKDKKKSILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENAVQGSAVEVQTYQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NKRCKDKKKSILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENAVQGSAVEVQTYQPP
250 260 270 280 290 300
310 320 330 340 350
pF1KB7 WKALSEFALQSDLDQPAFQQLVSFSESGSLGNSSGSDVTSLSSQLPDTPNSMVPSPVET
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WKALSEFALQSDLDQPAFQQLVSFSESGSLGNSSGSDVTSLSSQLPDTPNSMVPSPVET
310 320 330 340 350
>>CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 (349 aa)
initn: 1920 init1: 1813 opt: 1872 Z-score: 1226.4 bits: 235.4 E(32554): 5.4e-62
Smith-Waterman score: 1872; 75.6% identity (91.4% similar) in 349 aa overlap (11-358:1-348)
10 20 30 40 50 60
pF1KB7 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQ
.: ::: ::: ..:::::.:::::.::::::::::::::::::::.:
CCDS43 MGDMGDPPKKKRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 YLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVC
::::.::::::::::::::::.::.:::::::..:::..:.:::::..::::::::: .:
CCDS43 YLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVAC
60 70 80 90 100 110
130 140 150 160 170
pF1KB7 SRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLP-DAGSGRQPA
::::.:::::.::: :.::::: .. :::. :. .:: :: :.. . :.::::
CCDS43 SRQLIPGDEFALREDGLFCRADHDVV-ERASLGAGDPLSPLHPARPLQMAAEPISARQPA
120 130 140 150 160
180 190 200 210 220 230
pF1KB7 LRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWF
:::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWF
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB7 QNKRCKDKKKSILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENAVQGSAVEVQTYQP
:::::::::.::.:::::::: .:::..::.::::.::.:: ::....:.. ::::.:::
CCDS43 QNKRCKDKKRSIMMKQLQQQQPNDKTNIQGMTGTPMVAASPERHDGGLQANPVEVQSYQP
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB7 PWKALSEFALQSDLDQPAFQQLVSFSESGSLGNSSGSDVTSLSSQLPDTPNSMVPSPVET
:::.::.::::::.:::::::::.:::.: .::.::.:.:.:::::::::::: ::.:
CCDS43 PWKVLSDFALQSDIDQPAFQQLVNFSEGGPGSNSTGSEVASMSSQLPDTPNSMVASPIEA
290 300 310 320 330 340
>>CCDS55343.1 LMX1B gene_id:4010|Hs108|chr9 (406 aa)
initn: 466 init1: 307 opt: 638 Z-score: 432.1 bits: 88.7 E(32554): 9.5e-18
Smith-Waterman score: 638; 34.3% identity (59.0% similar) in 327 aa overlap (22-343:51-371)
10 20 30 40 50
pF1KB7 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAA
: :.: :: : :.:..::. . ::
CCDS55 CAKMLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVN-ESSWHEE
30 40 50 60 70
60 70 80 90 100 110
pF1KB7 CLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYH
::.:: :.: : : .:. :: : :::.:: .::. ::. :. .. ...:::: . :::
CCDS55 CLQCAACQQAL--TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYH
80 90 100 110 120 130
120 130 140 150 160
pF1KB7 IECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGAR--GLHL
. :: : :: ::: :::: :.: .:::..:. . .. :: . . :
CCDS55 LGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMK
140 150 160 170 180 190
170 180 190 200 210 220
pF1KB7 PDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTG
: :.: : :. .. : ::.:. .: ..... . .. .: ..: :. ::
CCDS55 PAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETG
200 210 220 230 240 250
230 240 250 260 270 280
pF1KB7 LSPRVIRVWFQNKRCKDKKKSILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENAVQG
:: ::..:::::.: : :: . .: :.::.:.. . :: : :. . . ..:
CCDS55 LSVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLG-QGEPGPGQGLGQEVLS-SRMEG
260 270 280 290 300 310
290 300 310 320 330 340
pF1KB7 SAVEVQTYQPPWKALSEFALQSDLDQPAFQQLVSFSE---SGSLGNSSGSDVTSLSSQLP
. :: . . . . .. ::: .. . . :. .. :: :::.:
CCDS55 MMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGNDSIFHDIDSD-TSLTSLSD
320 330 340 350 360 370
350
pF1KB7 DTPNSMVPSPVET
CCDS55 CFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS
380 390 400
>>CCDS6866.2 LMX1B gene_id:4010|Hs108|chr9 (395 aa)
initn: 436 init1: 307 opt: 621 Z-score: 421.3 bits: 86.7 E(32554): 3.8e-17
Smith-Waterman score: 636; 34.4% identity (60.5% similar) in 337 aa overlap (22-345:51-378)
10 20 30 40 50
pF1KB7 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAA
: :.: :: : :.:..::. . ::
CCDS68 CAKMLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVN-ESSWHEE
30 40 50 60 70
60 70 80 90 100 110
pF1KB7 CLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYH
::.:: :.: : : .:. :: : :::.:: .::. ::. :. .. ...:::: . :::
CCDS68 CLQCAACQQAL--TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYH
80 90 100 110 120 130
120 130 140 150 160
pF1KB7 IECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGAR--GLHL
. :: : :: ::: :::: :.: .:::..:. . .. :: . . :
CCDS68 LGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMK
140 150 160 170 180 190
170 180 190 200 210 220
pF1KB7 PDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTG
: :.: : :. .. : ::.:. .: ..... . .. .: ..: :. ::
CCDS68 PAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETG
200 210 220 230 240 250
230 240 250 260 270 280
pF1KB7 LSPRVIRVWFQNKRCKDKKKSILMKQLQQQQHSDK-------TSLQGLTG--TPLVAGSP
:: ::..:::::.: : :: . .: :.::.:.. . ..:. . :::. .
CCDS68 LSVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQEVLSSRMEGMMASYTPLAPPQQ
260 270 280 290 300 310
290 300 310 320 330
pF1KB7 --IRHENAVQGSAVEVQTYQPPWKALSEFALQSDLDQPAFQQLVSFSESGSLGNSSGSDV
. :.. ::. : : . .. .. :.:. . .:.:.:. ::.: ::
CCDS68 QIVAMEQSPYGSSDPFQQGLTPPQMPGNDSIFHDIDSDT--SLTSLSDC-FLGSS---DV
320 330 340 350 360 370
340 350
pF1KB7 TSLSSQLPDTPNSMVPSPVET
::....
CCDS68 GSLQARVGNPIDRLYSMQSSYFAS
380 390
>>CCDS55342.1 LMX1B gene_id:4010|Hs108|chr9 (402 aa)
initn: 445 init1: 307 opt: 620 Z-score: 420.6 bits: 86.5 E(32554): 4.2e-17
Smith-Waterman score: 625; 33.6% identity (60.5% similar) in 339 aa overlap (22-345:51-385)
10 20 30 40 50
pF1KB7 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAA
: :.: :: : :.:..::. . ::
CCDS55 CAKMLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVN-ESSWHEE
30 40 50 60 70
60 70 80 90 100 110
pF1KB7 CLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYH
::.:: :.: : : .:. :: : :::.:: .::. ::. :. .. ...:::: . :::
CCDS55 CLQCAACQQAL--TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYH
80 90 100 110 120 130
120 130 140 150 160
pF1KB7 IECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGAR--GLHL
. :: : :: ::: :::: :.: .:::..:. . .. :: . . :
CCDS55 LGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMK
140 150 160 170 180 190
170 180 190 200 210 220
pF1KB7 PDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTG
: :.: : :. .. : ::.:. .: ..... . .. .: ..: :. ::
CCDS55 PAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETG
200 210 220 230 240 250
230 240 250 260 270 280
pF1KB7 LSPRVIRVWFQNKRCKDKKKSILMKQLQQQQHSDKTSLQGLTGTP---LVAGSPIRHENA
:: ::..:::::.: : :: . .: :.::.:.. . . :.. ... .:. .
CCDS55 LSVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQEVLSSRMEGMMASYTPLAPPQQ
260 270 280 290 300 310
290 300 310 320 330
pF1KB7 VQGSAVEVQTY---QPPWKALSEFALQSDLDQP-----AFQQLVSFSESGSLGNS--SGS
: :.: . : .: ..:. . .: .: :... : . ::.. ..:
CCDS55 -QIVAMEQSPYGSSDPFQQGLTPPQMPGDHMNPYGNDSIFHDIDSDTSLTSLSDCFLGSS
320 330 340 350 360 370
340 350
pF1KB7 DVTSLSSQLPDTPNSMVPSPVET
:: ::....
CCDS55 DVGSLQARVGNPIDRLYSMQSSYFAS
380 390 400
>>CCDS1247.1 LMX1A gene_id:4009|Hs108|chr1 (382 aa)
initn: 535 init1: 322 opt: 612 Z-score: 415.7 bits: 85.6 E(32554): 7.8e-17
Smith-Waterman score: 612; 38.7% identity (64.1% similar) in 256 aa overlap (25-278:33-278)
10 20 30 40 50
pF1KB7 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLK
..: :: : :.:.::.. : :: :..
CCDS12 DGLKMEENFQSAIDTSASFSSLLGRAVSPKSVCEGCQRVILDRFLLRLN-DSFWHEQCVQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 CAECSQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIEC
:: :.. :. : :: :: : ::: :: .::..::. : ... ...::::. ::::. :
CCDS12 CASCKEPLETT--CFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSC
70 80 90 100 110
120 130 140 150 160 170
pF1KB7 FRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSP--GPLPGARGLHLPDA
: : :: ::: :::: :.: .:::..:. : . :: . : ..:
CCDS12 FCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAH
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB7 GSGRQPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSP
:.:. : . . :: . : ::.:. .: ..... . .. .: ..: :. ::::
CCDS12 GAGKGTAEEGKDHK---RPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSV
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB7 RVIRVWFQNKRCKDKKKSILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENAVQGSAV
::..:::::.: : :: . . ::::..:. . : :... .:
CCDS12 RVVQVWFQNQRAKMKK----LARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTA
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB7 EVQTYQPPWKALSEFALQSDLDQPAFQQLVSFSESGSLGNSSGSDVTSLSSQLPDTPNSM
CCDS12 LPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCF
300 310 320 330 340 350
>>CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 (388 aa)
initn: 412 init1: 250 opt: 514 Z-score: 352.6 bits: 73.9 E(32554): 2.6e-13
Smith-Waterman score: 621; 37.3% identity (62.4% similar) in 287 aa overlap (14-267:51-333)
10 20 30 40
pF1KB7 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVS
: : .:: :.:.:::..: :.. : ..
CCDS30 IQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPEKP--ALCAGCGGKISDRYYL-LA
30 40 50 60 70
50 60 70 80 90 100
pF1KB7 PDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFGI-KCAKCQVGFSSSDLV
: .:: :::: ::. :. :::..::. :::.:: : :.. .::.:..:.:.:..:
CCDS30 VDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMV
80 90 100 110 120 130
110 120 130 140 150
pF1KB7 MRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLE-------RAAAGSP
:::::::::. :: ::.:.. : ::.:.... . ::: ::. . .
CCDS30 MRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAA
140 150 160 170 180 190
160 170 180 190
pF1KB7 RSPG-PLPGARGLHLPDAGSGRQ---PAL---------------RPHVHKQ------TEK
.: : :: : . : :. ::: :. .. ..:
CCDS30 KSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQK
200 210 220 230 240 250
200 210 220 230 240 250
pF1KB7 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKKS
: :.:: ....::.:... .: : ::: .::.. :::. ::..::::: : : ...
CCDS30 TKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAK-FRRN
260 270 280 290 300 310
260 270 280 290 300 310
pF1KB7 ILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENAVQGSAVEVQTYQPPWKALSEFALQ
.: .. ...: :::
CCDS30 LLRQENGGVDKADGTSLPAPPSADSGALTPPGTATTLTDLTNPTITVVTSVTSNMDSHES
320 330 340 350 360 370
>>CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 (397 aa)
initn: 412 init1: 250 opt: 514 Z-score: 352.5 bits: 73.9 E(32554): 2.6e-13
Smith-Waterman score: 621; 37.3% identity (62.4% similar) in 287 aa overlap (14-267:60-342)
10 20 30 40
pF1KB7 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVS
: : .:: :.:.:::..: :.. : ..
CCDS13 IQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPEKP--ALCAGCGGKISDRYYL-LA
30 40 50 60 70 80
50 60 70 80 90 100
pF1KB7 PDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFGI-KCAKCQVGFSSSDLV
: .:: :::: ::. :. :::..::. :::.:: : :.. .::.:..:.:.:..:
CCDS13 VDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMV
90 100 110 120 130 140
110 120 130 140 150
pF1KB7 MRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLE-------RAAAGSP
:::::::::. :: ::.:.. : ::.:.... . ::: ::. . .
CCDS13 MRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAA
150 160 170 180 190 200
160 170 180 190
pF1KB7 RSPG-PLPGARGLHLPDAGSGRQ---PAL---------------RPHVHKQ------TEK
.: : :: : . : :. ::: :. .. ..:
CCDS13 KSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQK
210 220 230 240 250 260
200 210 220 230 240 250
pF1KB7 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKKS
: :.:: ....::.:... .: : ::: .::.. :::. ::..::::: : : ...
CCDS13 TKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAK-FRRN
270 280 290 300 310 320
260 270 280 290 300 310
pF1KB7 ILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENAVQGSAVEVQTYQPPWKALSEFALQ
.: .. ...: :::
CCDS13 LLRQENGGVDKADGTSLPAPPSADSGALTPPGTATTLTDLTNPTITVVTSVTSNMDSHES
330 340 350 360 370 380
>>CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9 (406 aa)
initn: 448 init1: 255 opt: 461 Z-score: 318.3 bits: 67.6 E(32554): 2.1e-11
Smith-Waterman score: 596; 35.9% identity (59.8% similar) in 301 aa overlap (25-274:51-346)
10 20 30 40 50
pF1KB7 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLK
:.:.:::..: :.. : .. : .:: :::
CCDS68 RAKSEAPAISSAIDRGDTETTMPSISSDRAALCAGCGGKISDRYYL-LAVDKQWHMRCLK
30 40 50 60 70
60 70 80 90 100 110
pF1KB7 CAECSQYLDETCTCFVRDGKTYCKRDYVRLFGI-KCAKCQVGFSSSDLVMRARDSVYHIE
: ::. :. ::: .::. :::.:: : :.. .::.:..:.:.:..:::::: :::..
CCDS68 CCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN
80 90 100 110 120 130
120 130 140 150
pF1KB7 CFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLE---------------RAAAGSPRSP
:: :..:...: ::.:.... . :: ::. :::.. .:
CCDS68 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFNHADVAAAAAAAAAAKSA
140 150 160 170 180 190
160 170 180
pF1KB7 G-PLPGARGLHLPD-AGSGRQPALRPHVHKQ-----------------------------
: :: : :: : : ::. .:.
CCDS68 GLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRDQP
200 210 220 230 240 250
190 200 210 220 230 240
pF1KB7 ---TEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC
..:: :.:: ....::.:... .: : ::: .::.. :::. ::..::::: :
CCDS68 YPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARA
260 270 280 290 300 310
250 260 270 280 290 300
pF1KB7 KDKKKSILMKQLQQQQHSDKTSLQGL-TGTPLVAGSPIRHENAVQGSAVEVQTYQPPWKA
: ... :.. :.. ::.. .: ::::
CCDS68 KFRRN--LLR--QENTGVDKSTDAALQTGTPSGPASELSNASLSPSSTPTTLTDLTSPTL
320 330 340 350 360 370
310 320 330 340 350
pF1KB7 LSEFALQSDLDQPAFQQLVSFSESGSLGNSSGSDVTSLSSQLPDTPNSMVPSPVET
CCDS68 PTVTSVLTSVPGNLEGHEPHSPSQTTLTNLF
380 390 400
>>CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 (402 aa)
initn: 575 init1: 273 opt: 458 Z-score: 316.4 bits: 67.3 E(32554): 2.6e-11
Smith-Waterman score: 572; 33.0% identity (55.6% similar) in 358 aa overlap (10-356:22-326)
10 20 30 40
pF1KB7 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEW
.:. .: .. : .:.:: ..: :.:::.. : .:
CCDS69 MEARGELGPARESAGGDLLLALLARRADLRREIP---LCAGCDQHILDRFILKAL-DRHW
10 20 30 40 50
50 60 70 80 90 100
pF1KB7 HAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDS
:. ::::..: : : :: : ..::: :. . :: ::: ::.:. ...: ::.:
CCDS69 HSKCLKCSDCHTPLAER--CFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDF
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB7 VYHIECFRCSVCSRQLLPGDEFSLREH-ELLCRADHGLLLERAAAGSPRSPGPLPGARGL
:::..:: : ::.::: :::: : : .:.:.::. .: : .. . :
CCDS69 VYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRP---------
120 130 140 150 160
170 180 190 200 210 220
pF1KB7 HLPDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEM
::... :::.::.. : ..:.: ..:::
CCDS69 ---------------------------RTTITAKQLETLKSAYNTSPKPARHVREQLSSE
170 180 190
230 240 250 260 270 280
pF1KB7 TGLSPRVIRVWFQNKRCKDKK-KSILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENA
:::. ::..:::::.: :.:. :. .: : . .: :: ....
CCDS69 TGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRG--------GSKSDKDSV
200 210 220 230 240 250
290 300 310 320 330
pF1KB7 VQGSAVEVQTYQPPWKALSEFA----LQSDLDQPAFQQLVSFSESGSLGNSS----GSDV
.:. .... : .:.:.. : ..: .:. : : ::.::: : :
CCDS69 QEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPT-QALGR--PSGALGNFSLEHGGLAG
260 270 280 290 300
340 350
pF1KB7 TSLSSQL-PDTPNSMVPSPVET
.: : .: .. :::
CCDS69 PEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGPPPMRVLA
310 320 330 340 350 360
359 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 01:28:54 2016 done: Tue Nov 8 01:28:55 2016
Total Scan time: 2.460 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]