FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3171, 403 aa 1>>>pF1KE3171 403 - 403 aa - 403 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8925+/-0.000403; mu= 18.8142+/- 0.025 mean_var=62.6478+/-12.623, 0's: 0 Z-trim(110.5): 25 B-trim: 0 in 0/54 Lambda= 0.162040 statistics sampled from 18863 (18880) to 18863 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.587), E-opt: 0.2 (0.221), width: 16 Scan time: 8.410 The best scores are: opt bits E(85289) NP_671717 (OMIM: 609096) F-box only protein 22 iso ( 403) 2680 635.6 6.5e-182 XP_011519749 (OMIM: 609096) PREDICTED: F-box only ( 299) 1973 470.2 2.9e-132 NP_036302 (OMIM: 609096) F-box only protein 22 iso ( 276) 1759 420.2 3.2e-117 >>NP_671717 (OMIM: 609096) F-box only protein 22 isoform (403 aa) initn: 2680 init1: 2680 opt: 2680 Z-score: 3386.9 bits: 635.6 E(85289): 6.5e-182 Smith-Waterman score: 2680; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403) 10 20 30 40 50 60 pF1KE3 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_671 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_671 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_671 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_671 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 STFSDMNIILAGGQVDNLSSLTSEKNPLDIDASGVVGLSFSGHRIQSATVLLNEDVSDEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_671 STFSDMNIILAGGQVDNLSSLTSEKNPLDIDASGVVGLSFSGHRIQSATVLLNEDVSDEK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 TAEAAMQRLKAANIPEHNTIGFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_671 TAEAAMQRLKAANIPEHNTIGFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGN 310 320 330 340 350 360 370 380 390 400 pF1KE3 GEIGCDRIVTGNFILRKCNEVKDDDLFHSYTTIMALIHLGSSK ::::::::::::::::::::::::::::::::::::::::::: NP_671 GEIGCDRIVTGNFILRKCNEVKDDDLFHSYTTIMALIHLGSSK 370 380 390 400 >>XP_011519749 (OMIM: 609096) PREDICTED: F-box only prot (299 aa) initn: 1973 init1: 1973 opt: 1973 Z-score: 2495.5 bits: 470.2 E(85289): 2.9e-132 Smith-Waterman score: 1973; 100.0% identity (100.0% similar) in 299 aa overlap (105-403:1-299) 80 90 100 110 120 130 pF1KE3 EAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGHKRARKRTSMETALA :::::::::::::::::::::::::::::: XP_011 MADSETFISLEECRGHKRARKRTSMETALA 10 20 30 140 150 160 170 180 190 pF1KE3 LEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFPQIEGIKIQPFHFIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFPQIEGIKIQPFHFIK 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE3 DPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVVSTFSDMNIILAGGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVVSTFSDMNIILAGGQ 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE3 VDNLSSLTSEKNPLDIDASGVVGLSFSGHRIQSATVLLNEDVSDEKTAEAAMQRLKAANI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VDNLSSLTSEKNPLDIDASGVVGLSFSGHRIQSATVLLNEDVSDEKTAEAAMQRLKAANI 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE3 PEHNTIGFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGNGEIGCDRIVTGNFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PEHNTIGFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGNGEIGCDRIVTGNFI 220 230 240 250 260 270 380 390 400 pF1KE3 LRKCNEVKDDDLFHSYTTIMALIHLGSSK ::::::::::::::::::::::::::::: XP_011 LRKCNEVKDDDLFHSYTTIMALIHLGSSK 280 290 >>NP_036302 (OMIM: 609096) F-box only protein 22 isoform (276 aa) initn: 1759 init1: 1759 opt: 1759 Z-score: 2225.6 bits: 420.2 E(85289): 3.2e-117 Smith-Waterman score: 1759; 100.0% identity (100.0% similar) in 265 aa overlap (1-265:1-265) 10 20 30 40 50 60 pF1KE3 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 STFSDMNIILAGGQVDNLSSLTSEKNPLDIDASGVVGLSFSGHRIQSATVLLNEDVSDEK ::::::::::::::::::::::::: NP_036 STFSDMNIILAGGQVDNLSSLTSEKYVLCASDFVCE 250 260 270 403 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:10:37 2016 done: Sun Nov 6 14:10:38 2016 Total Scan time: 8.410 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]