FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5070, 93 aa 1>>>pF1KE5070 93 - 93 aa - 93 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3527+/-0.000486; mu= 10.1517+/- 0.030 mean_var=77.8246+/-15.226, 0's: 0 Z-trim(116.6): 3 B-trim: 0 in 0/54 Lambda= 0.145384 statistics sampled from 17212 (17214) to 17212 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.529), width: 16 Scan time: 1.440 The best scores are: opt bits E(32554) CCDS10236.1 LARP6 gene_id:55323|Hs108|chr15 ( 93) 603 134.1 1.2e-32 CCDS32281.1 LARP6 gene_id:55323|Hs108|chr15 ( 491) 444 101.3 4.9e-22 >>CCDS10236.1 LARP6 gene_id:55323|Hs108|chr15 (93 aa) initn: 603 init1: 603 opt: 603 Z-score: 699.5 bits: 134.1 E(32554): 1.2e-32 Smith-Waterman score: 603; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93) 10 20 30 40 50 60 pF1KE5 MAQSGGEARPGPKTAVQIRVAIQEAEDVDELEDEEEGAETRGAGDPARYLSPGWGSASEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MAQSGGEARPGPKTAVQIRVAIQEAEDVDELEDEEEGAETRGAGDPARYLSPGWGSASEE 10 20 30 40 50 60 70 80 90 pF1KE5 EPSRGHRNRSSVNSRTMLASFIVSSAPSTAPST ::::::::::::::::::::::::::::::::: CCDS10 EPSRGHRNRSSVNSRTMLASFIVSSAPSTAPST 70 80 90 >>CCDS32281.1 LARP6 gene_id:55323|Hs108|chr15 (491 aa) initn: 444 init1: 444 opt: 444 Z-score: 509.2 bits: 101.3 E(32554): 4.9e-22 Smith-Waterman score: 444; 93.0% identity (97.2% similar) in 71 aa overlap (1-71:1-71) 10 20 30 40 50 60 pF1KE5 MAQSGGEARPGPKTAVQIRVAIQEAEDVDELEDEEEGAETRGAGDPARYLSPGWGSASEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MAQSGGEARPGPKTAVQIRVAIQEAEDVDELEDEEEGAETRGAGDPARYLSPGWGSASEE 10 20 30 40 50 60 70 80 90 pF1KE5 EPSRGHRNRSSVNSRTMLASFIVSSAPSTAPST :::::: . .. CCDS32 EPSRGHSGTTASGGENEREDLEQEWKPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVR 70 80 90 100 110 120 93 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:45:13 2016 done: Tue Nov 8 04:45:13 2016 Total Scan time: 1.440 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]