FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3511, 397 aa 1>>>pF1KE3511 397 - 397 aa - 397 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4472+/-0.000327; mu= 13.4434+/- 0.021 mean_var=129.4945+/-25.771, 0's: 0 Z-trim(118.9): 19 B-trim: 50 in 1/53 Lambda= 0.112706 statistics sampled from 32383 (32402) to 32383 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.38), width: 16 Scan time: 9.480 The best scores are: opt bits E(85289) NP_079441 (OMIM: 609885) RNA polymerase II elongat ( 397) 2685 447.6 2.4e-125 XP_016864732 (OMIM: 601874) PREDICTED: RNA polymer ( 455) 437 82.1 2.9e-15 XP_016864729 (OMIM: 601874) PREDICTED: RNA polymer ( 508) 437 82.2 3.1e-15 XP_016864730 (OMIM: 601874) PREDICTED: RNA polymer ( 508) 437 82.2 3.1e-15 XP_016864731 (OMIM: 601874) PREDICTED: RNA polymer ( 508) 437 82.2 3.1e-15 XP_006714638 (OMIM: 601874) PREDICTED: RNA polymer ( 585) 437 82.2 3.5e-15 NP_036213 (OMIM: 601874) RNA polymerase II elongat ( 640) 437 82.3 3.7e-15 XP_016882826 (OMIM: 600284) PREDICTED: RNA polymer ( 337) 394 75.0 2.9e-13 XP_016882825 (OMIM: 600284) PREDICTED: RNA polymer ( 370) 394 75.1 3.2e-13 XP_016882824 (OMIM: 600284) PREDICTED: RNA polymer ( 488) 394 75.2 3.9e-13 NP_006523 (OMIM: 600284) RNA polymerase II elongat ( 621) 394 75.3 4.6e-13 XP_016864728 (OMIM: 601874) PREDICTED: RNA polymer ( 589) 263 54.0 1.1e-06 XP_005248504 (OMIM: 610153,610572) PREDICTED: MARV ( 546) 238 49.9 1.8e-05 NP_001231663 (OMIM: 610153,610572) MARVEL domain-c ( 546) 238 49.9 1.8e-05 XP_005248502 (OMIM: 610153,610572) PREDICTED: MARV ( 558) 238 49.9 1.8e-05 XP_005248503 (OMIM: 610153,610572) PREDICTED: MARV ( 558) 238 49.9 1.8e-05 NP_001033692 (OMIM: 610153,610572) MARVEL domain-c ( 558) 238 49.9 1.8e-05 XP_011526632 (OMIM: 600284) PREDICTED: RNA polymer ( 357) 192 42.2 0.0024 >>NP_079441 (OMIM: 609885) RNA polymerase II elongation (397 aa) initn: 2685 init1: 2685 opt: 2685 Z-score: 2371.3 bits: 447.6 E(85289): 2.4e-125 Smith-Waterman score: 2685; 100.0% identity (100.0% similar) in 397 aa overlap (1-397:1-397) 10 20 30 40 50 60 pF1KE3 MEELQEPLRGQLRLCFTQAARTSLLLLRLNDAALRALQECQRQQVRPVIAFQGHRGYLRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 MEELQEPLRGQLRLCFTQAARTSLLLLRLNDAALRALQECQRQQVRPVIAFQGHRGYLRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 PGPGWSCLFSFIVSQCCQEGAGGSLDLVCQRFLRSGPNSLHCLGSLRERLIIWAAMDSIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 PGPGWSCLFSFIVSQCCQEGAGGSLDLVCQRFLRSGPNSLHCLGSLRERLIIWAAMDSIP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 APSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQGQSLPGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 APSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQGQSLPGSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 REHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 LQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQ 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 HAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 HAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFR 310 320 330 340 350 360 370 380 390 pF1KE3 KQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS ::::::::::::::::::::::::::::::::::::: NP_079 KQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS 370 380 390 >>XP_016864732 (OMIM: 601874) PREDICTED: RNA polymerase (455 aa) initn: 449 init1: 404 opt: 437 Z-score: 395.1 bits: 82.1 E(85289): 2.9e-15 Smith-Waterman score: 437; 33.6% identity (66.0% similar) in 253 aa overlap (152-393:200-449) 130 140 150 160 170 180 pF1KE3 PSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQG-QSLPGSS .:.: . .. : : ..: :.:: .: XP_016 TSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDS 170 180 190 200 210 220 190 200 210 220 230 pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSA----SRKRLDKKRSVPVATVELEEKRFRTLPL . . .: . .: ...:: .. : .....:. . . :. . XP_016 FSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQ 230 240 250 260 270 280 240 250 260 270 280 290 pF1KE3 VPSPLQGLTNQDLQEGEDWEQEDE--DMDPRLEHSSS-VQED---SESPSPEDIPDYLLQ . . . . . . .: :: ..:.: .. .::. :.:: : :: ..::::.. XP_016 IKK--HDIETIEEKE-EDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIK 290 300 310 320 330 340 300 310 320 330 340 350 pF1KE3 YRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLED : :: : ::.. :..::...: ::: ::::. :...:::.: :. ::. :. ::. ... XP_016 YIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHE 350 360 370 380 390 400 360 370 380 390 pF1KE3 KIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS ...:::.:.... :.:.::: ::::::.::.::: :: ::... XP_016 EVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS 410 420 430 440 450 >>XP_016864729 (OMIM: 601874) PREDICTED: RNA polymerase (508 aa) initn: 449 init1: 404 opt: 437 Z-score: 394.5 bits: 82.2 E(85289): 3.1e-15 Smith-Waterman score: 437; 33.6% identity (66.0% similar) in 253 aa overlap (152-393:253-502) 130 140 150 160 170 180 pF1KE3 PSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQG-QSLPGSS .:.: . .. : : ..: :.:: .: XP_016 TSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDS 230 240 250 260 270 280 190 200 210 220 230 pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSA----SRKRLDKKRSVPVATVELEEKRFRTLPL . . .: . .: ...:: .. : .....:. . . :. . XP_016 FSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQ 290 300 310 320 330 340 240 250 260 270 280 290 pF1KE3 VPSPLQGLTNQDLQEGEDWEQEDE--DMDPRLEHSSS-VQED---SESPSPEDIPDYLLQ . . . . . . .: :: ..:.: .. .::. :.:: : :: ..::::.. XP_016 IKK--HDIETIEEKE-EDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIK 350 360 370 380 390 300 310 320 330 340 350 pF1KE3 YRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLED : :: : ::.. :..::...: ::: ::::. :...:::.: :. ::. :. ::. ... XP_016 YIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHE 400 410 420 430 440 450 360 370 380 390 pF1KE3 KIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS ...:::.:.... :.:.::: ::::::.::.::: :: ::... XP_016 EVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS 460 470 480 490 500 >>XP_016864730 (OMIM: 601874) PREDICTED: RNA polymerase (508 aa) initn: 449 init1: 404 opt: 437 Z-score: 394.5 bits: 82.2 E(85289): 3.1e-15 Smith-Waterman score: 437; 33.6% identity (66.0% similar) in 253 aa overlap (152-393:253-502) 130 140 150 160 170 180 pF1KE3 PSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQG-QSLPGSS .:.: . .. : : ..: :.:: .: XP_016 TSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDS 230 240 250 260 270 280 190 200 210 220 230 pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSA----SRKRLDKKRSVPVATVELEEKRFRTLPL . . .: . .: ...:: .. : .....:. . . :. . XP_016 FSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQ 290 300 310 320 330 340 240 250 260 270 280 290 pF1KE3 VPSPLQGLTNQDLQEGEDWEQEDE--DMDPRLEHSSS-VQED---SESPSPEDIPDYLLQ . . . . . . .: :: ..:.: .. .::. :.:: : :: ..::::.. XP_016 IKK--HDIETIEEKE-EDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIK 350 360 370 380 390 300 310 320 330 340 350 pF1KE3 YRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLED : :: : ::.. :..::...: ::: ::::. :...:::.: :. ::. :. ::. ... XP_016 YIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHE 400 410 420 430 440 450 360 370 380 390 pF1KE3 KIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS ...:::.:.... :.:.::: ::::::.::.::: :: ::... XP_016 EVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS 460 470 480 490 500 >>XP_016864731 (OMIM: 601874) PREDICTED: RNA polymerase (508 aa) initn: 449 init1: 404 opt: 437 Z-score: 394.5 bits: 82.2 E(85289): 3.1e-15 Smith-Waterman score: 437; 33.6% identity (66.0% similar) in 253 aa overlap (152-393:253-502) 130 140 150 160 170 180 pF1KE3 PSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQG-QSLPGSS .:.: . .. : : ..: :.:: .: XP_016 TSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDS 230 240 250 260 270 280 190 200 210 220 230 pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSA----SRKRLDKKRSVPVATVELEEKRFRTLPL . . .: . .: ...:: .. : .....:. . . :. . XP_016 FSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQ 290 300 310 320 330 340 240 250 260 270 280 290 pF1KE3 VPSPLQGLTNQDLQEGEDWEQEDE--DMDPRLEHSSS-VQED---SESPSPEDIPDYLLQ . . . . . . .: :: ..:.: .. .::. :.:: : :: ..::::.. XP_016 IKK--HDIETIEEKE-EDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIK 350 360 370 380 390 300 310 320 330 340 350 pF1KE3 YRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLED : :: : ::.. :..::...: ::: ::::. :...:::.: :. ::. :. ::. ... XP_016 YIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHE 400 410 420 430 440 450 360 370 380 390 pF1KE3 KIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS ...:::.:.... :.:.::: ::::::.::.::: :: ::... XP_016 EVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS 460 470 480 490 500 >>XP_006714638 (OMIM: 601874) PREDICTED: RNA polymerase (585 aa) initn: 551 init1: 404 opt: 437 Z-score: 393.7 bits: 82.2 E(85289): 3.5e-15 Smith-Waterman score: 437; 33.6% identity (66.0% similar) in 253 aa overlap (152-393:330-579) 130 140 150 160 170 180 pF1KE3 PSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQG-QSLPGSS .:.: . .. : : ..: :.:: .: XP_006 TSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDS 300 310 320 330 340 350 190 200 210 220 230 pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSA----SRKRLDKKRSVPVATVELEEKRFRTLPL . . .: . .: ...:: .. : .....:. . . :. . XP_006 FSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQ 360 370 380 390 400 410 240 250 260 270 280 290 pF1KE3 VPSPLQGLTNQDLQEGEDWEQEDE--DMDPRLEHSSS-VQED---SESPSPEDIPDYLLQ . . . . . . .: :: ..:.: .. .::. :.:: : :: ..::::.. XP_006 IKK--HDIETIEEKE-EDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIK 420 430 440 450 460 470 300 310 320 330 340 350 pF1KE3 YRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLED : :: : ::.. :..::...: ::: ::::. :...:::.: :. ::. :. ::. ... XP_006 YIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHE 480 490 500 510 520 530 360 370 380 390 pF1KE3 KIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS ...:::.:.... :.:.::: ::::::.::.::: :: ::... XP_006 EVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS 540 550 560 570 580 >>NP_036213 (OMIM: 601874) RNA polymerase II elongation (640 aa) initn: 599 init1: 404 opt: 437 Z-score: 393.1 bits: 82.3 E(85289): 3.7e-15 Smith-Waterman score: 437; 33.6% identity (66.0% similar) in 253 aa overlap (152-393:385-634) 130 140 150 160 170 180 pF1KE3 PSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQG-QSLPGSS .:.: . .. : : ..: :.:: .: NP_036 TSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDS 360 370 380 390 400 410 190 200 210 220 230 pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSA----SRKRLDKKRSVPVATVELEEKRFRTLPL . . .: . .: ...:: .. : .....:. . . :. . NP_036 FSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQ 420 430 440 450 460 470 240 250 260 270 280 290 pF1KE3 VPSPLQGLTNQDLQEGEDWEQEDE--DMDPRLEHSSS-VQED---SESPSPEDIPDYLLQ . . . . . . .: :: ..:.: .. .::. :.:: : :: ..::::.. NP_036 IKK--HDIETIEEKE-EDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIK 480 490 500 510 520 530 300 310 320 330 340 350 pF1KE3 YRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLED : :: : ::.. :..::...: ::: ::::. :...:::.: :. ::. :. ::. ... NP_036 YIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHE 540 550 560 570 580 590 360 370 380 390 pF1KE3 KIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS ...:::.:.... :.:.::: ::::::.::.::: :: ::... NP_036 EVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS 600 610 620 630 640 >>XP_016882826 (OMIM: 600284) PREDICTED: RNA polymerase (337 aa) initn: 412 init1: 383 opt: 394 Z-score: 359.0 bits: 75.0 E(85289): 2.9e-13 Smith-Waterman score: 403; 36.5% identity (64.5% similar) in 203 aa overlap (191-393:150-331) 170 180 190 200 210 220 pF1KE3 EVSVSDPLASNQGQSLPGSSREHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVP .: :. : .. :.. :.:. ::.:.. XP_016 LGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAA- 120 130 140 150 160 170 230 240 250 260 270 280 pF1KE3 VATVELEEKRFRTLPLVPSPLQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPS :.: :: .: : : . : :. . :: .: : XP_016 ------EDKPRAQLPDC-APATHAT-----PGAPADT------PGLNGTCSV--SSVPTS 180 190 200 210 290 300 310 320 330 340 pF1KE3 PEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRR . :::::.: :: :.::...:..::...:.::: ::::. ..:: .: :..... . XP_016 TSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQ 220 230 240 250 260 270 350 360 370 380 390 pF1KE3 GTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS :. ::.. . .:.:::.:..: .: .::.::::::.::.::: :: :.... XP_016 GSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQRQLQAWP 280 290 300 310 320 330 >>XP_016882825 (OMIM: 600284) PREDICTED: RNA polymerase (370 aa) initn: 441 init1: 383 opt: 394 Z-score: 358.5 bits: 75.1 E(85289): 3.2e-13 Smith-Waterman score: 403; 36.5% identity (64.5% similar) in 203 aa overlap (191-393:183-364) 170 180 190 200 210 220 pF1KE3 EVSVSDPLASNQGQSLPGSSREHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVP .: :. : .. :.. :.:. ::.:.. XP_016 LGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAA- 160 170 180 190 200 210 230 240 250 260 270 280 pF1KE3 VATVELEEKRFRTLPLVPSPLQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPS :.: :: .: : : . : :. . :: .: : XP_016 ------EDKPRAQLPDC-APATHAT-----PGAPADT------PGLNGTCSV--SSVPTS 220 230 240 250 290 300 310 320 330 340 pF1KE3 PEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRR . :::::.: :: :.::...:..::...:.::: ::::. ..:: .: :..... . XP_016 TSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQ 260 270 280 290 300 310 350 360 370 380 390 pF1KE3 GTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS :. ::.. . .:.:::.:..: .: .::.::::::.::.::: :: :.... XP_016 GSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQRQLQAWP 320 330 340 350 360 370 >>XP_016882824 (OMIM: 600284) PREDICTED: RNA polymerase (488 aa) initn: 441 init1: 383 opt: 394 Z-score: 356.9 bits: 75.2 E(85289): 3.9e-13 Smith-Waterman score: 403; 36.5% identity (64.5% similar) in 203 aa overlap (191-393:301-482) 170 180 190 200 210 220 pF1KE3 EVSVSDPLASNQGQSLPGSSREHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVP .: :. : .. :.. :.:. ::.:.. XP_016 LGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAA- 280 290 300 310 320 230 240 250 260 270 280 pF1KE3 VATVELEEKRFRTLPLVPSPLQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPS :.: :: .: : : . : :. . :: .: : XP_016 ------EDKPRAQLPDC-APATHAT-----PGAPADT------PGLNGTCSV--SSVPTS 330 340 350 360 290 300 310 320 330 340 pF1KE3 PEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRR . :::::.: :: :.::...:..::...:.::: ::::. ..:: .: :..... . XP_016 TSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQ 370 380 390 400 410 420 350 360 370 380 390 pF1KE3 GTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS :. ::.. . .:.:::.:..: .: .::.::::::.::.::: :: :.... XP_016 GSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQRQLQAWP 430 440 450 460 470 480 397 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:22:25 2016 done: Tue Nov 8 10:22:27 2016 Total Scan time: 9.480 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]