FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3511, 397 aa 1>>>pF1KE3511 397 - 397 aa - 397 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7267+/-0.000771; mu= 11.3000+/- 0.047 mean_var=111.9602+/-22.420, 0's: 0 Z-trim(111.6): 11 B-trim: 9 in 1/51 Lambda= 0.121211 statistics sampled from 12537 (12545) to 12537 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.385), width: 16 Scan time: 2.350 The best scores are: opt bits E(32554) CCDS10102.1 ELL3 gene_id:80237|Hs108|chr15 ( 397) 2685 480.0 1.7e-135 CCDS4080.1 ELL2 gene_id:22936|Hs108|chr5 ( 640) 437 87.0 5.3e-17 CCDS12380.1 ELL gene_id:8178|Hs108|chr19 ( 621) 394 79.5 9.5e-15 >>CCDS10102.1 ELL3 gene_id:80237|Hs108|chr15 (397 aa) initn: 2685 init1: 2685 opt: 2685 Z-score: 2546.3 bits: 480.0 E(32554): 1.7e-135 Smith-Waterman score: 2685; 100.0% identity (100.0% similar) in 397 aa overlap (1-397:1-397) 10 20 30 40 50 60 pF1KE3 MEELQEPLRGQLRLCFTQAARTSLLLLRLNDAALRALQECQRQQVRPVIAFQGHRGYLRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MEELQEPLRGQLRLCFTQAARTSLLLLRLNDAALRALQECQRQQVRPVIAFQGHRGYLRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 PGPGWSCLFSFIVSQCCQEGAGGSLDLVCQRFLRSGPNSLHCLGSLRERLIIWAAMDSIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 PGPGWSCLFSFIVSQCCQEGAGGSLDLVCQRFLRSGPNSLHCLGSLRERLIIWAAMDSIP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 APSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQGQSLPGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 APSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQGQSLPGSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 REHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQ 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 HAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 HAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFR 310 320 330 340 350 360 370 380 390 pF1KE3 KQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS ::::::::::::::::::::::::::::::::::::: CCDS10 KQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS 370 380 390 >>CCDS4080.1 ELL2 gene_id:22936|Hs108|chr5 (640 aa) initn: 599 init1: 404 opt: 437 Z-score: 418.7 bits: 87.0 E(32554): 5.3e-17 Smith-Waterman score: 437; 33.6% identity (66.0% similar) in 253 aa overlap (152-393:385-634) 130 140 150 160 170 180 pF1KE3 PSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQG-QSLPGSS .:.: . .. : : ..: :.:: .: CCDS40 TSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDS 360 370 380 390 400 410 190 200 210 220 230 pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSA----SRKRLDKKRSVPVATVELEEKRFRTLPL . . .: . .: ...:: .. : .....:. . . :. . CCDS40 FSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQ 420 430 440 450 460 470 240 250 260 270 280 290 pF1KE3 VPSPLQGLTNQDLQEGEDWEQEDE--DMDPRLEHSSS-VQED---SESPSPEDIPDYLLQ . . . . . . .: :: ..:.: .. .::. :.:: : :: ..::::.. CCDS40 IKK--HDIETIEEKE-EDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIK 480 490 500 510 520 530 300 310 320 330 340 350 pF1KE3 YRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLED : :: : ::.. :..::...: ::: ::::. :...:::.: :. ::. :. ::. ... CCDS40 YIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHE 540 550 560 570 580 590 360 370 380 390 pF1KE3 KIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS ...:::.:.... :.:.::: ::::::.::.::: :: ::... CCDS40 EVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS 600 610 620 630 640 >>CCDS12380.1 ELL gene_id:8178|Hs108|chr19 (621 aa) initn: 541 init1: 383 opt: 394 Z-score: 378.2 bits: 79.5 E(32554): 9.5e-15 Smith-Waterman score: 403; 36.5% identity (64.5% similar) in 203 aa overlap (191-393:434-615) 170 180 190 200 210 220 pF1KE3 EVSVSDPLASNQGQSLPGSSREHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVP .: :. : .. :.. :.:. ::.:.. CCDS12 LGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAA- 410 420 430 440 450 460 230 240 250 260 270 280 pF1KE3 VATVELEEKRFRTLPLVPSPLQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPS :.: :: .: : : . : :. . :: .: : CCDS12 ------EDKPRAQLPDC-APATHAT-----PGAPADT------PGLNGTCSV--SSVPTS 470 480 490 500 290 300 310 320 330 340 pF1KE3 PEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRR . :::::.: :: :.::...:..::...:.::: ::::. ..:: .: :..... . CCDS12 TSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQ 510 520 530 540 550 560 350 360 370 380 390 pF1KE3 GTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS :. ::.. . .:.:::.:..: .: .::.::::::.::.::: :: :.... CCDS12 GSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQRQLQAWP 570 580 590 600 610 620 397 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:22:25 2016 done: Tue Nov 8 10:22:25 2016 Total Scan time: 2.350 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]