FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9687, 229 aa
  1>>>pF1KE9687 229 - 229 aa - 229 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5307+/-0.000284; mu= 14.3035+/- 0.018
 mean_var=75.7288+/-15.143, 0's: 0 Z-trim(118.5): 13  B-trim: 0 in 0/55
 Lambda= 0.147382
 statistics sampled from 31499 (31510) to 31499 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.369), width:  16
 Scan time:  5.550

The best scores are:                                      opt bits E(85289)
NP_009211 (OMIM: 606020) protein Mis18-beta isofor ( 229) 1543 336.6 2.1e-92
NP_001304789 (OMIM: 606020) protein Mis18-beta iso ( 188)  898 199.4 3.5e-51


>>NP_009211 (OMIM: 606020) protein Mis18-beta isoform 1   (229 aa)
 initn: 1543 init1: 1543 opt: 1543  Z-score: 1779.9  bits: 336.6 E(85289): 2.1e-92
Smith-Waterman score: 1543; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KE9 MAAQPLRHRSRCATPPRGDFCGGTERAIDQASFTTSMEWDTQVVKGSSPLGPAGLGAEEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MAAQPLRHRSRCATPPRGDFCGGTERAIDQASFTTSMEWDTQVVKGSSPLGPAGLGAEEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 AAGPQLPSWLQPERCAVFQCAQCHAVLADSVHLAWDLSRSLGAVVFSRVTNNVVLEAPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 AAGPQLPSWLQPERCAVFQCAQCHAVLADSVHLAWDLSRSLGAVVFSRVTNNVVLEAPFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 VGIEGSLKGSTYNLLFCGSCGIPVGFHLYSTHAALAALRGHFCLSSDKMVCYLLKTKAIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 VGIEGSLKGSTYNLLFCGSCGIPVGFHLYSTHAALAALRGHFCLSSDKMVCYLLKTKAIV
              130       140       150       160       170       180

              190       200       210       220         
pF1KE9 NASEMDIQNVPLSEKIAELKEKIVLTHNRLKSLMKILSEVTPDQSKPEN
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NASEMDIQNVPLSEKIAELKEKIVLTHNRLKSLMKILSEVTPDQSKPEN
              190       200       210       220         

>>NP_001304789 (OMIM: 606020) protein Mis18-beta isoform  (188 aa)
 initn: 1235 init1: 898 opt: 898  Z-score: 1040.0  bits: 199.4 E(85289): 3.5e-51
Smith-Waterman score: 1157; 82.1% identity (82.1% similar) in 229 aa overlap (1-229:1-188)

               10        20        30        40        50        60
pF1KE9 MAAQPLRHRSRCATPPRGDFCGGTERAIDQASFTTSMEWDTQVVKGSSPLGPAGLGAEEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAQPLRHRSRCATPPRGDFCGGTERAIDQASFTTSMEWDTQVVKGSSPLGPAGLGAEEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 AAGPQLPSWLQPERCAVFQCAQCHAVLADSVHLAWDLSRSLGAVVFSRVTNNVVLEAPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAGPQLPSWLQPERCAVFQCAQCHAVLADSVHLAWDLSRSLGAVVFSRVTNNVVLEAPFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 VGIEGSLKGSTYNLLFCGSCGIPVGFHLYSTHAALAALRGHFCLSSDKMVCYLLKTKAIV
       ::::::::::                                         :::::::::
NP_001 VGIEGSLKGS-----------------------------------------YLLKTKAIV
              130                                                  

              190       200       210       220         
pF1KE9 NASEMDIQNVPLSEKIAELKEKIVLTHNRLKSLMKILSEVTPDQSKPEN
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NASEMDIQNVPLSEKIAELKEKIVLTHNRLKSLMKILSEVTPDQSKPEN
     140       150       160       170       180        




229 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:35:00 2016 done: Tue Nov  8 10:35:01 2016
 Total Scan time:  5.550 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]