FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9687, 229 aa
  1>>>pF1KE9687 229 - 229 aa - 229 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4523+/-0.00064; mu= 14.7033+/- 0.039
 mean_var=73.9407+/-14.638, 0's: 0 Z-trim(111.6): 11  B-trim: 0 in 0/55
 Lambda= 0.149153
 statistics sampled from 12519 (12525) to 12519 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.385), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS10074.1 OIP5 gene_id:11339|Hs108|chr15         ( 229) 1543 340.4 5.9e-94


>>CCDS10074.1 OIP5 gene_id:11339|Hs108|chr15              (229 aa)
 initn: 1543 init1: 1543 opt: 1543  Z-score: 1800.3  bits: 340.4 E(32554): 5.9e-94
Smith-Waterman score: 1543; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KE9 MAAQPLRHRSRCATPPRGDFCGGTERAIDQASFTTSMEWDTQVVKGSSPLGPAGLGAEEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAAQPLRHRSRCATPPRGDFCGGTERAIDQASFTTSMEWDTQVVKGSSPLGPAGLGAEEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 AAGPQLPSWLQPERCAVFQCAQCHAVLADSVHLAWDLSRSLGAVVFSRVTNNVVLEAPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AAGPQLPSWLQPERCAVFQCAQCHAVLADSVHLAWDLSRSLGAVVFSRVTNNVVLEAPFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 VGIEGSLKGSTYNLLFCGSCGIPVGFHLYSTHAALAALRGHFCLSSDKMVCYLLKTKAIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VGIEGSLKGSTYNLLFCGSCGIPVGFHLYSTHAALAALRGHFCLSSDKMVCYLLKTKAIV
              130       140       150       160       170       180

              190       200       210       220         
pF1KE9 NASEMDIQNVPLSEKIAELKEKIVLTHNRLKSLMKILSEVTPDQSKPEN
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NASEMDIQNVPLSEKIAELKEKIVLTHNRLKSLMKILSEVTPDQSKPEN
              190       200       210       220         




229 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:34:59 2016 done: Tue Nov  8 10:35:00 2016
 Total Scan time:  1.830 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]