FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6534, 64 aa 1>>>pF1KE6534 64 - 64 aa - 64 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6988+/-0.000234; mu= 9.2097+/- 0.015 mean_var=48.0664+/- 9.535, 0's: 0 Z-trim(121.8): 1 B-trim: 117 in 1/54 Lambda= 0.184992 statistics sampled from 38862 (38863) to 38862 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.846), E-opt: 0.2 (0.456), width: 16 Scan time: 2.200 The best scores are: opt bits E(85289) NP_061118 (OMIM: 224230,606471) H/ACA ribonucleopr ( 64) 444 124.8 9.5e-30 >>NP_061118 (OMIM: 224230,606471) H/ACA ribonucleoprotei (64 aa) initn: 444 init1: 444 opt: 444 Z-score: 655.1 bits: 124.8 E(85289): 9.5e-30 Smith-Waterman score: 444; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64) 10 20 30 40 50 60 pF1KE6 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 10 20 30 40 50 60 pF1KE6 RPVL :::: NP_061 RPVL 64 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:10:54 2016 done: Tue Nov 8 14:10:55 2016 Total Scan time: 2.200 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]