FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3045, 184 aa 1>>>pF1KE3045 184 - 184 aa - 184 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8919+/-0.000585; mu= 12.3971+/- 0.036 mean_var=99.1107+/-19.189, 0's: 0 Z-trim(115.7): 10 B-trim: 6 in 1/53 Lambda= 0.128829 statistics sampled from 16282 (16292) to 16282 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.5), width: 16 Scan time: 2.130 The best scores are: opt bits E(32554) CCDS10029.1 GREM1 gene_id:26585|Hs108|chr15 ( 184) 1275 245.8 1.1e-65 CCDS53927.1 GREM1 gene_id:26585|Hs108|chr15 ( 143) 763 150.6 4e-37 CCDS31070.1 GREM2 gene_id:64388|Hs108|chr1 ( 168) 622 124.4 3.5e-29 >>CCDS10029.1 GREM1 gene_id:26585|Hs108|chr15 (184 aa) initn: 1275 init1: 1275 opt: 1275 Z-score: 1292.8 bits: 245.8 E(32554): 1.1e-65 Smith-Waterman score: 1275; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184) 10 20 30 40 50 60 pF1KE3 MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSPQQPGSRNRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSPQQPGSRNRGR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 GQGRGTAMPGEEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 GQGRGTAMPGEEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCYG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 QCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 QCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCIS 130 140 150 160 170 180 pF1KE3 IDLD :::: CCDS10 IDLD >>CCDS53927.1 GREM1 gene_id:26585|Hs108|chr15 (143 aa) initn: 777 init1: 755 opt: 763 Z-score: 780.0 bits: 150.6 E(32554): 4e-37 Smith-Waterman score: 904; 77.7% identity (77.7% similar) in 184 aa overlap (1-184:1-143) 10 20 30 40 50 60 pF1KE3 MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSPQQPGSRNRGR ::::::::::::::::::::::::::::::::::::::: CCDS53 MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDKA--------------------- 10 20 30 70 80 90 100 110 120 pF1KE3 GQGRGTAMPGEEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCYG :::::::::::::::::::::::::::::::::::::::: CCDS53 --------------------LHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCYG 40 50 60 70 130 140 150 160 170 180 pF1KE3 QCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 QCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCIS 80 90 100 110 120 130 pF1KE3 IDLD :::: CCDS53 IDLD 140 >>CCDS31070.1 GREM2 gene_id:64388|Hs108|chr1 (168 aa) initn: 675 init1: 614 opt: 622 Z-score: 637.4 bits: 124.4 E(32554): 3.5e-29 Smith-Waterman score: 647; 55.5% identity (75.1% similar) in 173 aa overlap (12-183:9-162) 10 20 30 40 50 pF1KE3 MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDK-AQHNDSEQTQSPQQPGSRNRG :.:...:. .::..:. :::: : : .. :.::. : . CCDS31 MFWKLSLSLFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQHQIK------- 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 RGQGRGTAMPGEEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCY ::: :::::: :::::::: ::::::::.::. :::: ::::.::::: CCDS31 ------------EVLASSQEALVVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCY 60 70 80 90 120 130 140 150 160 170 pF1KE3 GQCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCI :::::::::::..::: :::::.::::.. :...: :.:: :.:: . :.. .::::::. CCDS31 GQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRCM 100 110 120 130 140 150 180 pF1KE3 SIDLD :..: CCDS31 SVNLSDSDKQ 160 184 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:55:11 2016 done: Sun Nov 6 04:55:11 2016 Total Scan time: 2.130 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]