FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3073, 234 aa 1>>>pF1KE3073 234 - 234 aa - 234 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5156+/-0.00105; mu= 12.6877+/- 0.063 mean_var=60.0869+/-12.012, 0's: 0 Z-trim(102.1): 26 B-trim: 0 in 0/47 Lambda= 0.165457 statistics sampled from 6808 (6814) to 6808 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.209), width: 16 Scan time: 1.770 The best scores are: opt bits E(32554) CCDS9917.1 OTUB2 gene_id:78990|Hs108|chr14 ( 234) 1526 372.9 1e-103 CCDS8055.1 OTUB1 gene_id:55611|Hs108|chr11 ( 271) 728 182.4 2.5e-46 >>CCDS9917.1 OTUB2 gene_id:78990|Hs108|chr14 (234 aa) initn: 1526 init1: 1526 opt: 1526 Z-score: 1975.6 bits: 372.9 E(32554): 1e-103 Smith-Waterman score: 1526; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234) 10 20 30 40 50 60 pF1KE3 MSETSFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 MSETSFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 LESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 VFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQI 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 TALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYAADKH :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 TALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYAADKH 190 200 210 220 230 >>CCDS8055.1 OTUB1 gene_id:55611|Hs108|chr11 (271 aa) initn: 708 init1: 598 opt: 728 Z-score: 945.1 bits: 182.4 E(32554): 2.5e-46 Smith-Waterman score: 728; 47.8% identity (79.5% similar) in 224 aa overlap (8-229:47-270) 10 20 30 pF1KE3 MSETSFNLISEKCDILSILRDHPEN-RIYRRKIEELS :.::. .. . ... :. ::..::..: CCDS80 DSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLH 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE3 KRFTAIRKTKGDGNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFR :... ::::. ::::::::.:.:.::.:: :.:. .:: .. .::.. :: : .. CCDS80 KKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIE 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE3 NFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDE .: :.:....: :::. ::..:: :::::.::..: .::::::.... .. ::.:::. CCDS80 DFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG 140 150 160 170 180 190 160 170 180 190 200 210 pF1KE3 EMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTAL-NHHVFPEAATPS .:.:: .::::: : :::.: ::.::::...::::.:. . . : :.:::.. :. CCDS80 GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPK 200 210 220 230 240 250 220 230 pF1KE3 VYLLYKTSHYNILYAADKH :::::. .::.::: CCDS80 VYLLYRPGHYDILYK 260 270 234 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:19:01 2016 done: Sun Nov 6 05:19:02 2016 Total Scan time: 1.770 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]