FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1143, 425 aa 1>>>pF1KE1143 425 - 425 aa - 425 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3741+/-0.000368; mu= 12.2162+/- 0.023 mean_var=97.6706+/-19.397, 0's: 0 Z-trim(115.1): 65 B-trim: 66 in 1/54 Lambda= 0.129775 statistics sampled from 25356 (25420) to 25356 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.298), width: 16 Scan time: 9.070 The best scores are: opt bits E(85289) NP_786924 (OMIM: 613816) putative E3 ubiquitin-pro ( 425) 2935 560.0 4e-159 >>NP_786924 (OMIM: 613816) putative E3 ubiquitin-protein (425 aa) initn: 2935 init1: 2935 opt: 2935 Z-score: 2977.8 bits: 560.0 E(85289): 4e-159 Smith-Waterman score: 2935; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425) 10 20 30 40 50 60 pF1KE1 MAGAEGAAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_786 MAGAEGAAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_786 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 NSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_786 NSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VCQACMKRCSFLWAYAAQLAVTKISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKEDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_786 VCQACMKRCSFLWAYAAQLAVTKISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKEDV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PEQGKDDVREVKVEQNSEPCAGSSSESDLQTVFKNESLNAESKSGCKLQELKAKQLIKKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_786 PEQGKDDVREVKVEQNSEPCAGSSSESDLQTVFKNESLNAESKSGCKLQELKAKQLIKKD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 TATYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_786 TATYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 LSSMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_786 LSSMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM 370 380 390 400 410 420 pF1KE1 QYYCS ::::: NP_786 QYYCS 425 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:23:59 2016 done: Sun Nov 6 14:24:00 2016 Total Scan time: 9.070 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]