FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5141, 109 aa 1>>>pF1KE5141 109 - 109 aa - 109 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.3017+/-0.000286; mu= 15.6566+/- 0.018 mean_var=95.4630+/-24.402, 0's: 0 Z-trim(118.4): 139 B-trim: 1851 in 1/53 Lambda= 0.131267 statistics sampled from 31030 (31364) to 31030 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.368), width: 16 Scan time: 3.710 The best scores are: opt bits E(85289) NP_112487 (OMIM: 610211) SRA stem-loop-interacting ( 109) 738 148.8 1.6e-36 NP_001254792 (OMIM: 610211) SRA stem-loop-interact ( 107) 712 143.9 4.9e-35 NP_001254793 (OMIM: 610211) SRA stem-loop-interact ( 92) 594 121.4 2.4e-28 NP_001003810 (OMIM: 601324) heterogeneous nuclear ( 287) 181 43.9 0.00016 NP_002129 (OMIM: 601324) heterogeneous nuclear rib ( 306) 181 44.0 0.00017 NP_112737 (OMIM: 601324) heterogeneous nuclear rib ( 336) 181 44.0 0.00018 NP_112738 (OMIM: 601324) heterogeneous nuclear rib ( 355) 181 44.0 0.00018 NP_004490 (OMIM: 602688) heterogeneous nuclear rib ( 285) 168 41.4 0.00089 NP_112556 (OMIM: 602688) heterogeneous nuclear rib ( 332) 168 41.5 0.00096 XP_016867879 (OMIM: 612074,612079) PREDICTED: RNA- ( 684) 171 42.6 0.00098 NP_060547 (OMIM: 612074,612079) RNA-binding protei ( 759) 171 42.6 0.001 XP_011526212 (OMIM: 607430) PREDICTED: DAZ-associa ( 366) 158 39.7 0.0038 NP_733829 (OMIM: 607430) DAZ-associated protein 1 ( 378) 158 39.7 0.0039 XP_016882070 (OMIM: 607430) PREDICTED: DAZ-associa ( 406) 158 39.8 0.004 XP_005259588 (OMIM: 607430) PREDICTED: DAZ-associa ( 406) 158 39.8 0.004 NP_061832 (OMIM: 607430) DAZ-associated protein 1 ( 407) 158 39.8 0.004 XP_016856352 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 158 39.8 0.0041 XP_016856356 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 158 39.8 0.0041 XP_016856357 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 158 39.8 0.0041 XP_016856354 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 158 39.8 0.0041 NP_031401 (OMIM: 605078,612069) TAR DNA-binding pr ( 414) 158 39.8 0.0041 XP_016856355 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 158 39.8 0.0041 XP_016856353 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 158 39.8 0.0041 XP_011526211 (OMIM: 607430) PREDICTED: DAZ-associa ( 521) 158 39.9 0.0046 XP_011526210 (OMIM: 607430) PREDICTED: DAZ-associa ( 521) 158 39.9 0.0046 XP_011526209 (OMIM: 607430) PREDICTED: DAZ-associa ( 548) 158 40.0 0.0048 XP_011526208 (OMIM: 607430) PREDICTED: DAZ-associa ( 549) 158 40.0 0.0048 XP_011526207 (OMIM: 607430) PREDICTED: DAZ-associa ( 549) 158 40.0 0.0048 XP_011526206 (OMIM: 607430) PREDICTED: DAZ-associa ( 550) 158 40.0 0.0048 >>NP_112487 (OMIM: 610211) SRA stem-loop-interacting RNA (109 aa) initn: 738 init1: 738 opt: 738 Z-score: 776.5 bits: 148.8 E(85289): 1.6e-36 Smith-Waterman score: 738; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109) 10 20 30 40 50 60 pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR 10 20 30 40 50 60 70 80 90 100 pF1KE5 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF ::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF 70 80 90 100 >>NP_001254792 (OMIM: 610211) SRA stem-loop-interacting (107 aa) initn: 600 init1: 600 opt: 712 Z-score: 749.9 bits: 143.9 E(85289): 4.9e-35 Smith-Waterman score: 712; 98.2% identity (98.2% similar) in 109 aa overlap (1-109:1-107) 10 20 30 40 50 60 pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR 10 20 30 40 50 60 70 80 90 100 pF1KE5 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF ::::::::::::::::::::::::::::: :::::::::::::::::: NP_001 GLGWVQFSSEEGLRNALQQENHIIDGVKV--HTRRPKLPQTSDDEKKDF 70 80 90 100 >>NP_001254793 (OMIM: 610211) SRA stem-loop-interacting (92 aa) initn: 594 init1: 594 opt: 594 Z-score: 629.8 bits: 121.4 E(85289): 2.4e-28 Smith-Waterman score: 594; 100.0% identity (100.0% similar) in 88 aa overlap (1-88:1-88) 10 20 30 40 50 60 pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR 10 20 30 40 50 60 70 80 90 100 pF1KE5 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF :::::::::::::::::::::::::::: NP_001 GLGWVQFSSEEGLRNALQQENHIIDGVKCLFF 70 80 90 >>NP_001003810 (OMIM: 601324) heterogeneous nuclear ribo (287 aa) initn: 256 init1: 140 opt: 181 Z-score: 202.1 bits: 43.9 E(85289): 0.00016 Smith-Waterman score: 181; 34.1% identity (69.3% similar) in 88 aa overlap (22-109:81-166) 10 20 30 40 50 pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILP :. . : .....::..:..::.: : : NP_001 TASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLK 60 70 80 90 100 110 60 70 80 90 100 pF1KE5 FDKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF .: :: ::.:.: :. :.. ....:..: ..: :: . .: : .:.. :: : NP_001 LDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG-KV-IDPKRAKAMKTKEPVKKIFVG 120 130 140 150 160 NP_001 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 170 180 190 200 210 220 >>NP_002129 (OMIM: 601324) heterogeneous nuclear ribonuc (306 aa) initn: 256 init1: 140 opt: 181 Z-score: 201.8 bits: 44.0 E(85289): 0.00017 Smith-Waterman score: 181; 34.1% identity (69.3% similar) in 88 aa overlap (22-109:100-185) 10 20 30 40 50 pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILP :. . : .....::..:..::.: : : NP_002 ASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLK 70 80 90 100 110 120 60 70 80 90 100 pF1KE5 FDKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF .: :: ::.:.: :. :.. ....:..: ..: :: . .: : .:.. :: : NP_002 LDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG-KV-IDPKRAKAMKTKEPVKKIFVG 130 140 150 160 170 180 NP_002 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 190 200 210 220 230 240 >>NP_112737 (OMIM: 601324) heterogeneous nuclear ribonuc (336 aa) initn: 256 init1: 140 opt: 181 Z-score: 201.4 bits: 44.0 E(85289): 0.00018 Smith-Waterman score: 181; 34.1% identity (69.3% similar) in 88 aa overlap (22-109:81-166) 10 20 30 40 50 pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILP :. . : .....::..:..::.: : : NP_112 TASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLK 60 70 80 90 100 110 60 70 80 90 100 pF1KE5 FDKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF .: :: ::.:.: :. :.. ....:..: ..: :: . .: : .:.. :: : NP_112 LDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG-KV-IDPKRAKAMKTKEPVKKIFVG 120 130 140 150 160 NP_112 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 170 180 190 200 210 220 >>NP_112738 (OMIM: 601324) heterogeneous nuclear ribonuc (355 aa) initn: 256 init1: 140 opt: 181 Z-score: 201.2 bits: 44.0 E(85289): 0.00018 Smith-Waterman score: 181; 34.1% identity (69.3% similar) in 88 aa overlap (22-109:100-185) 10 20 30 40 50 pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILP :. . : .....::..:..::.: : : NP_112 ASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLK 70 80 90 100 110 120 60 70 80 90 100 pF1KE5 FDKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF .: :: ::.:.: :. :.. ....:..: ..: :: . .: : .:.. :: : NP_112 LDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG-KV-IDPKRAKAMKTKEPVKKIFVG 130 140 150 160 170 180 NP_112 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 190 200 210 220 230 240 >>NP_004490 (OMIM: 602688) heterogeneous nuclear ribonuc (285 aa) initn: 188 init1: 164 opt: 168 Z-score: 188.8 bits: 41.4 E(85289): 0.00089 Smith-Waterman score: 168; 30.7% identity (68.2% similar) in 88 aa overlap (22-109:73-157) 10 20 30 40 50 pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILP :: . : .....::..:..::.: : . NP_004 ATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIK 50 60 70 80 90 100 60 70 80 90 100 pF1KE5 FDKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF .: .:: ::.:.. :.. .....:.:..: .:: .: . . . .: :: : NP_004 MDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDG---RVIDPKKAMAMKKDPVKKIFVG 110 120 130 140 150 NP_004 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTV 160 170 180 190 200 210 >>NP_112556 (OMIM: 602688) heterogeneous nuclear ribonuc (332 aa) initn: 188 init1: 164 opt: 168 Z-score: 188.2 bits: 41.5 E(85289): 0.00096 Smith-Waterman score: 168; 30.7% identity (68.2% similar) in 88 aa overlap (22-109:73-157) 10 20 30 40 50 pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILP :: . : .....::..:..::.: : . NP_112 ATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIK 50 60 70 80 90 100 60 70 80 90 100 pF1KE5 FDKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF .: .:: ::.:.. :.. .....:.:..: .:: .: . . . .: :: : NP_112 MDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDG---RVIDPKKAMAMKKDPVKKIFVG 110 120 130 140 150 NP_112 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTV 160 170 180 190 200 210 >>XP_016867879 (OMIM: 612074,612079) PREDICTED: RNA-bind (684 aa) initn: 188 init1: 146 opt: 171 Z-score: 188.1 bits: 42.6 E(85289): 0.00098 Smith-Waterman score: 171; 35.6% identity (65.5% similar) in 87 aa overlap (22-108:7-92) 10 20 30 40 50 60 pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR :: :.: .: : ::.: :.: : :..:.. .: . : XP_016 MAGLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACR 10 20 30 40 70 80 90 100 pF1KE5 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF :.:.: :: : .. ::. : ..: :..: . . :: . . .. :. XP_016 GFGYVTFSMLEDVQRALK-EITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKA 50 60 70 80 90 100 XP_016 KKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNL 110 120 130 140 150 160 109 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:47:03 2016 done: Mon Nov 7 21:47:03 2016 Total Scan time: 3.710 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]