FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5141, 109 aa
  1>>>pF1KE5141 109 - 109 aa - 109 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2417+/-0.000586; mu= 9.4647+/- 0.035
 mean_var=64.8507+/-14.476, 0's: 0 Z-trim(111.5): 105  B-trim: 712 in 1/50
 Lambda= 0.159264
 statistics sampled from 12263 (12403) to 12263 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.381), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(32554)
CCDS9866.1 SLIRP gene_id:81892|Hs108|chr14         ( 109)  738 177.5 1.4e-45
CCDS58331.1 SLIRP gene_id:81892|Hs108|chr14        ( 107)  712 171.5 8.8e-44
CCDS73668.1 SLIRP gene_id:81892|Hs108|chr14        (  92)  594 144.4 1.1e-35


>>CCDS9866.1 SLIRP gene_id:81892|Hs108|chr14              (109 aa)
 initn: 738 init1: 738 opt: 738  Z-score: 931.7  bits: 177.5 E(32554): 1.4e-45
Smith-Waterman score: 738; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109)

               10        20        30        40        50        60
pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR
               10        20        30        40        50        60

               70        80        90       100         
pF1KE5 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
               70        80        90       100         

>>CCDS58331.1 SLIRP gene_id:81892|Hs108|chr14             (107 aa)
 initn: 600 init1: 600 opt: 712  Z-score: 899.5  bits: 171.5 E(32554): 8.8e-44
Smith-Waterman score: 712; 98.2% identity (98.2% similar) in 109 aa overlap (1-109:1-107)

               10        20        30        40        50        60
pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR
               10        20        30        40        50        60

               70        80        90       100         
pF1KE5 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
       :::::::::::::::::::::::::::::  ::::::::::::::::::
CCDS58 GLGWVQFSSEEGLRNALQQENHIIDGVKV--HTRRPKLPQTSDDEKKDF
               70        80          90       100       

>>CCDS73668.1 SLIRP gene_id:81892|Hs108|chr14             (92 aa)
 initn: 594 init1: 594 opt: 594  Z-score: 754.0  bits: 144.4 E(32554): 1.1e-35
Smith-Waterman score: 594; 100.0% identity (100.0% similar) in 88 aa overlap (1-88:1-88)

               10        20        30        40        50        60
pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR
               10        20        30        40        50        60

               70        80        90       100         
pF1KE5 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
       ::::::::::::::::::::::::::::                     
CCDS73 GLGWVQFSSEEGLRNALQQENHIIDGVKCLFF                 
               70        80        90                   




109 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:47:02 2016 done: Mon Nov  7 21:47:02 2016
 Total Scan time:  1.390 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]