FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6519, 213 aa
  1>>>pF1KE6519 213 - 213 aa - 213 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4775+/-0.000319; mu= 13.0051+/- 0.020
 mean_var=68.8747+/-13.636, 0's: 0 Z-trim(115.6): 27  B-trim: 0 in 0/54
 Lambda= 0.154541
 statistics sampled from 26072 (26094) to 26072 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.306), width:  16
 Scan time:  5.440

The best scores are:                                      opt bits E(85289)
NP_443105 (OMIM: 614068,614099) intraflagellar tra ( 213) 1404 321.6   6e-88
NP_001096034 (OMIM: 614068,614099) intraflagellar  ( 208) 1166 268.5 5.5e-72
NP_001242924 (OMIM: 614068,614099) intraflagellar  ( 113)  459 110.8 9.3e-25


>>NP_443105 (OMIM: 614068,614099) intraflagellar transpo  (213 aa)
 initn: 1404 init1: 1404 opt: 1404  Z-score: 1699.9  bits: 321.6 E(85289): 6e-88
Smith-Waterman score: 1404; 99.5% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE6 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GGWAGDSVKASNGTQTGKQQLDLNACYHKTHHRNLGLASLEEADIPIIPDLEEVQEEDFV
       :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_443 GGWAGDSVKASNGTQTGKQQLDLNACYHKTHHRDLGLASLEEADIPIIPDLEEVQEEDFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 LQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWD
              130       140       150       160       170       180

              190       200       210   
pF1KE6 WDHLFTEVSSEVLTEWDPLQTEKEDPAGQARHT
       :::::::::::::::::::::::::::::::::
NP_443 WDHLFTEVSSEVLTEWDPLQTEKEDPAGQARHT
              190       200       210   

>>NP_001096034 (OMIM: 614068,614099) intraflagellar tran  (208 aa)
 initn: 1179 init1: 737 opt: 1166  Z-score: 1413.3  bits: 268.5 E(85289): 5.5e-72
Smith-Waterman score: 1166; 85.5% identity (91.6% similar) in 214 aa overlap (1-213:1-208)

               10        20        30        40        50        60
pF1KE6 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ
               10        20        30        40        50        60

               70        80         90       100       110         
pF1KE6 GGWAGDSVKASNGTQTGKQQL-DLNACYHKTHHRNLGLASLEEADIPIIPDLEEVQEEDF
       :::::::::::.  . ..... :.    .. .  . :      .::::::::::::::::
NP_001 GGWAGDSVKASKFRRKASEEIEDFRLRPQSLNGSDYG------GDIPIIPDLEEVQEEDF
               70        80        90             100       110    

     120       130       140       150       160       170         
pF1KE6 VLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGW
          120       130       140       150       160       170    

     180       190       200       210   
pF1KE6 DWDHLFTEVSSEVLTEWDPLQTEKEDPAGQARHT
       ::::::::::::::::::::::::::::::::::
NP_001 DWDHLFTEVSSEVLTEWDPLQTEKEDPAGQARHT
          180       190       200        

>>NP_001242924 (OMIM: 614068,614099) intraflagellar tran  (113 aa)
 initn: 456 init1: 456 opt: 459  Z-score: 565.4  bits: 110.8 E(85289): 9.3e-25
Smith-Waterman score: 459; 86.6% identity (96.3% similar) in 82 aa overlap (1-82:1-82)

               10        20        30        40        50        60
pF1KE6 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GGWAGDSVKASNGTQTGKQQLDLNACYHKTHHRNLGLASLEEADIPIIPDLEEVQEEDFV
       :::::::::::.  . ......                                      
NP_001 GGWAGDSVKASKFRRKASEEIEEYVSSILILMVSYVDLGQQCSLGGHDLFHLC       
               70        80        90       100       110          




213 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:02:54 2016 done: Tue Nov  8 14:02:55 2016
 Total Scan time:  5.440 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]