FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6519, 213 aa
  1>>>pF1KE6519 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8581+/-0.000731; mu= 10.6153+/- 0.044
 mean_var=66.4052+/-13.341, 0's: 0 Z-trim(108.6): 18  B-trim: 0 in 0/52
 Lambda= 0.157389
 statistics sampled from 10295 (10308) to 10295 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.317), width:  16
 Scan time:  1.850

The best scores are:                                      opt bits E(32554)
CCDS9847.1 IFT43 gene_id:112752|Hs108|chr14        ( 213) 1404 327.2 4.6e-90
CCDS41973.1 IFT43 gene_id:112752|Hs108|chr14       ( 208) 1166 273.2 8.4e-74
CCDS58330.1 IFT43 gene_id:112752|Hs108|chr14       ( 113)  459 112.6   1e-25


>>CCDS9847.1 IFT43 gene_id:112752|Hs108|chr14             (213 aa)
 initn: 1404 init1: 1404 opt: 1404  Z-score: 1730.3  bits: 327.2 E(32554): 4.6e-90
Smith-Waterman score: 1404; 99.5% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE6 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GGWAGDSVKASNGTQTGKQQLDLNACYHKTHHRNLGLASLEEADIPIIPDLEEVQEEDFV
       :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS98 GGWAGDSVKASNGTQTGKQQLDLNACYHKTHHRDLGLASLEEADIPIIPDLEEVQEEDFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 LQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWD
              130       140       150       160       170       180

              190       200       210   
pF1KE6 WDHLFTEVSSEVLTEWDPLQTEKEDPAGQARHT
       :::::::::::::::::::::::::::::::::
CCDS98 WDHLFTEVSSEVLTEWDPLQTEKEDPAGQARHT
              190       200       210   

>>CCDS41973.1 IFT43 gene_id:112752|Hs108|chr14            (208 aa)
 initn: 1179 init1: 737 opt: 1166  Z-score: 1438.4  bits: 273.2 E(32554): 8.4e-74
Smith-Waterman score: 1166; 85.5% identity (91.6% similar) in 214 aa overlap (1-213:1-208)

               10        20        30        40        50        60
pF1KE6 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ
               10        20        30        40        50        60

               70        80         90       100       110         
pF1KE6 GGWAGDSVKASNGTQTGKQQL-DLNACYHKTHHRNLGLASLEEADIPIIPDLEEVQEEDF
       :::::::::::.  . ..... :.    .. .  . :      .::::::::::::::::
CCDS41 GGWAGDSVKASKFRRKASEEIEDFRLRPQSLNGSDYG------GDIPIIPDLEEVQEEDF
               70        80        90             100       110    

     120       130       140       150       160       170         
pF1KE6 VLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGW
          120       130       140       150       160       170    

     180       190       200       210   
pF1KE6 DWDHLFTEVSSEVLTEWDPLQTEKEDPAGQARHT
       ::::::::::::::::::::::::::::::::::
CCDS41 DWDHLFTEVSSEVLTEWDPLQTEKEDPAGQARHT
          180       190       200        

>>CCDS58330.1 IFT43 gene_id:112752|Hs108|chr14            (113 aa)
 initn: 456 init1: 456 opt: 459  Z-score: 575.2  bits: 112.6 E(32554): 1e-25
Smith-Waterman score: 459; 86.6% identity (96.3% similar) in 82 aa overlap (1-82:1-82)

               10        20        30        40        50        60
pF1KE6 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GGWAGDSVKASNGTQTGKQQLDLNACYHKTHHRNLGLASLEEADIPIIPDLEEVQEEDFV
       :::::::::::.  . ......                                      
CCDS58 GGWAGDSVKASKFRRKASEEIEEYVSSILILMVSYVDLGQQCSLGGHDLFHLC       
               70        80        90       100       110          




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:02:54 2016 done: Tue Nov  8 14:02:54 2016
 Total Scan time:  1.850 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]