Result of FASTA (omim) for
pFN21AE3218
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3218, 495 aa
1>>>pF1KE3218 495 - 495 aa - 495 aa
Library: /omim/omim.rfq.tfa
65638526 residues in 92875 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7789+/-0.000333; mu= 17.1209+/- 0.021
mean_var=111.7867+/-23.152, 0's: 0 Z-trim(116.2): 110 B-trim: 0 in 0/51
Lambda= 0.121305
statistics sampled from 28342 (28461) to 28342 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.306), width: 16
Scan time: 4.780
The best scores are: opt bits E(92875)
NP_056419 (OMIM: 616372) DDB1- and CUL4-associated ( 495) 3354 598.1 2e-170
XP_016876697 (OMIM: 616372) DDB1- and CUL4-associa ( 495) 3354 598.1 2e-170
XP_016876696 (OMIM: 616372) DDB1- and CUL4-associa ( 495) 3354 598.1 2e-170
XP_016876691 (OMIM: 616372) DDB1- and CUL4-associa ( 496) 3342 596.0 8.5e-170
XP_016876695 (OMIM: 616372) DDB1- and CUL4-associa ( 496) 3342 596.0 8.5e-170
XP_016876694 (OMIM: 616372) DDB1- and CUL4-associa ( 496) 3342 596.0 8.5e-170
XP_016876692 (OMIM: 616372) DDB1- and CUL4-associa ( 496) 3342 596.0 8.5e-170
NP_001339378 (OMIM: 616372) DDB1- and CUL4-associa ( 496) 3342 596.0 8.5e-170
XP_016876690 (OMIM: 616372) DDB1- and CUL4-associa ( 496) 3342 596.0 8.5e-170
NP_001156980 (OMIM: 616372) DDB1- and CUL4-associa ( 489) 3278 584.8 2e-166
NP_001339377 (OMIM: 616372) DDB1- and CUL4-associa ( 475) 2926 523.2 6.8e-148
XP_016876698 (OMIM: 616372) DDB1- and CUL4-associa ( 476) 2914 521.1 2.9e-147
XP_016876703 (OMIM: 616372) DDB1- and CUL4-associa ( 473) 2828 506.1 9.9e-143
XP_016876702 (OMIM: 616372) DDB1- and CUL4-associa ( 474) 2816 504.0 4.2e-142
NP_001156981 (OMIM: 616372) DDB1- and CUL4-associa ( 474) 2816 504.0 4.2e-142
XP_016876701 (OMIM: 616372) DDB1- and CUL4-associa ( 474) 2816 504.0 4.2e-142
NP_851937 (OMIM: 616372) DDB1- and CUL4-associated ( 395) 2642 473.4 5.5e-133
NP_851938 (OMIM: 616372) DDB1- and CUL4-associated ( 435) 2135 384.8 3e-106
XP_016876704 (OMIM: 616372) DDB1- and CUL4-associa ( 280) 1915 346.1 8.6e-95
NP_001339376 (OMIM: 616372) DDB1- and CUL4-associa ( 281) 1903 344.0 3.7e-94
>>NP_056419 (OMIM: 616372) DDB1- and CUL4-associated fac (495 aa)
initn: 3354 init1: 3354 opt: 3354 Z-score: 3181.4 bits: 598.1 E(92875): 2e-170
Smith-Waterman score: 3354; 99.4% identity (99.6% similar) in 495 aa overlap (1-495:1-495)
10 20 30 40 50 60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 STGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQGK
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_056 STGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQGK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 GWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 HVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPG
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
NP_056 HVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPG
430 440 450 460 470 480
490
pF1KE3 LLMAVGQDLYCYSYS
:::::::::::::::
NP_056 LLMAVGQDLYCYSYS
490
>>XP_016876697 (OMIM: 616372) DDB1- and CUL4-associated (495 aa)
initn: 3354 init1: 3354 opt: 3354 Z-score: 3181.4 bits: 598.1 E(92875): 2e-170
Smith-Waterman score: 3354; 99.4% identity (99.6% similar) in 495 aa overlap (1-495:1-495)
10 20 30 40 50 60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 STGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQGK
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
XP_016 STGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQGK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 GWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 HVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPG
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_016 HVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPG
430 440 450 460 470 480
490
pF1KE3 LLMAVGQDLYCYSYS
:::::::::::::::
XP_016 LLMAVGQDLYCYSYS
490
>>XP_016876696 (OMIM: 616372) DDB1- and CUL4-associated (495 aa)
initn: 3354 init1: 3354 opt: 3354 Z-score: 3181.4 bits: 598.1 E(92875): 2e-170
Smith-Waterman score: 3354; 99.4% identity (99.6% similar) in 495 aa overlap (1-495:1-495)
10 20 30 40 50 60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 STGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQGK
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
XP_016 STGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQGK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 GWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 HVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPG
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_016 HVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPG
430 440 450 460 470 480
490
pF1KE3 LLMAVGQDLYCYSYS
:::::::::::::::
XP_016 LLMAVGQDLYCYSYS
490
>>XP_016876691 (OMIM: 616372) DDB1- and CUL4-associated (496 aa)
initn: 3340 init1: 1815 opt: 3342 Z-score: 3170.0 bits: 596.0 E(92875): 8.5e-170
Smith-Waterman score: 3342; 99.2% identity (99.4% similar) in 496 aa overlap (1-495:1-496)
10 20 30 40 50 60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
XP_016 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQG
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
XP_016 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
430 440 450 460 470 480
480 490
pF1KE3 GLLMAVGQDLYCYSYS
::::::::::::::::
XP_016 GLLMAVGQDLYCYSYS
490
>>XP_016876695 (OMIM: 616372) DDB1- and CUL4-associated (496 aa)
initn: 3340 init1: 1815 opt: 3342 Z-score: 3170.0 bits: 596.0 E(92875): 8.5e-170
Smith-Waterman score: 3342; 99.2% identity (99.4% similar) in 496 aa overlap (1-495:1-496)
10 20 30 40 50 60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
XP_016 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQG
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
XP_016 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
430 440 450 460 470 480
480 490
pF1KE3 GLLMAVGQDLYCYSYS
::::::::::::::::
XP_016 GLLMAVGQDLYCYSYS
490
>>XP_016876694 (OMIM: 616372) DDB1- and CUL4-associated (496 aa)
initn: 3340 init1: 1815 opt: 3342 Z-score: 3170.0 bits: 596.0 E(92875): 8.5e-170
Smith-Waterman score: 3342; 99.2% identity (99.4% similar) in 496 aa overlap (1-495:1-496)
10 20 30 40 50 60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
XP_016 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQG
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
XP_016 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
430 440 450 460 470 480
480 490
pF1KE3 GLLMAVGQDLYCYSYS
::::::::::::::::
XP_016 GLLMAVGQDLYCYSYS
490
>>XP_016876692 (OMIM: 616372) DDB1- and CUL4-associated (496 aa)
initn: 3340 init1: 1815 opt: 3342 Z-score: 3170.0 bits: 596.0 E(92875): 8.5e-170
Smith-Waterman score: 3342; 99.2% identity (99.4% similar) in 496 aa overlap (1-495:1-496)
10 20 30 40 50 60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
XP_016 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQG
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
XP_016 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
430 440 450 460 470 480
480 490
pF1KE3 GLLMAVGQDLYCYSYS
::::::::::::::::
XP_016 GLLMAVGQDLYCYSYS
490
>>NP_001339378 (OMIM: 616372) DDB1- and CUL4-associated (496 aa)
initn: 3340 init1: 1815 opt: 3342 Z-score: 3170.0 bits: 596.0 E(92875): 8.5e-170
Smith-Waterman score: 3342; 99.2% identity (99.4% similar) in 496 aa overlap (1-495:1-496)
10 20 30 40 50 60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
NP_001 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_001 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQG
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
430 440 450 460 470 480
480 490
pF1KE3 GLLMAVGQDLYCYSYS
::::::::::::::::
NP_001 GLLMAVGQDLYCYSYS
490
>>XP_016876690 (OMIM: 616372) DDB1- and CUL4-associated (496 aa)
initn: 3340 init1: 1815 opt: 3342 Z-score: 3170.0 bits: 596.0 E(92875): 8.5e-170
Smith-Waterman score: 3342; 99.2% identity (99.4% similar) in 496 aa overlap (1-495:1-496)
10 20 30 40 50 60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
XP_016 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQG
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
XP_016 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
430 440 450 460 470 480
480 490
pF1KE3 GLLMAVGQDLYCYSYS
::::::::::::::::
XP_016 GLLMAVGQDLYCYSYS
490
>>NP_001156980 (OMIM: 616372) DDB1- and CUL4-associated (489 aa)
initn: 2890 init1: 1815 opt: 3278 Z-score: 3109.6 bits: 584.8 E(92875): 2e-166
Smith-Waterman score: 3278; 98.0% identity (98.0% similar) in 496 aa overlap (1-495:1-489)
10 20 30 40 50 60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
NP_001 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
:::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_001 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLA-------PLLFNGCRSGEIFAIDLRCGNQG
310 320 330 340 350
360 370 380 390 400 410
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
360 370 380 390 400 410
420 430 440 450 460 470
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
420 430 440 450 460 470
480 490
pF1KE3 GLLMAVGQDLYCYSYS
::::::::::::::::
NP_001 GLLMAVGQDLYCYSYS
480
495 residues in 1 query sequences
65638526 residues in 92875 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Apr 23 11:11:42 2019 done: Tue Apr 23 11:11:43 2019
Total Scan time: 4.780 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]