FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6261, 247 aa 1>>>pF1KE6261 247 - 247 aa - 247 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5748+/-0.000489; mu= 9.5884+/- 0.030 mean_var=118.6888+/-23.261, 0's: 0 Z-trim(111.7): 23 B-trim: 0 in 0/54 Lambda= 0.117725 statistics sampled from 20420 (20425) to 20420 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.585), E-opt: 0.2 (0.239), width: 16 Scan time: 6.650 The best scores are: opt bits E(85289) NP_057078 (OMIM: 609398) V-type proton ATPase subu ( 247) 1507 267.0 2.3e-71 >>NP_057078 (OMIM: 609398) V-type proton ATPase subunit (247 aa) initn: 1507 init1: 1507 opt: 1507 Z-score: 1402.4 bits: 267.0 E(85289): 2.3e-71 Smith-Waterman score: 1507; 99.6% identity (99.6% similar) in 247 aa overlap (1-247:1-247) 10 20 30 40 50 60 pF1KE6 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VMREAAFSLAEAMFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: NP_057 VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ERTLAYIITELDEREREEFYRLKKIQEKKKILKEKSEKDLEQRRAAGEVLEPANLLAEEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 ERTLAYIITELDEREREEFYRLKKIQEKKKILKEKSEKDLEQRRAAGEVLEPANLLAEEK 190 200 210 220 230 240 pF1KE6 DEDLLFE ::::::: NP_057 DEDLLFE 247 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:34:42 2016 done: Tue Nov 8 11:34:43 2016 Total Scan time: 6.650 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]