FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1896, 427 aa
  1>>>pF1KE1896 427 - 427 aa - 427 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6140+/-0.000992; mu= 8.1054+/- 0.060
 mean_var=146.2905+/-28.634, 0's: 0 Z-trim(108.9): 20  B-trim: 0 in 0/53
 Lambda= 0.106039
 statistics sampled from 10532 (10538) to 10532 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.324), width:  16
 Scan time:  3.010

The best scores are:                                      opt bits E(32554)
CCDS9764.1 AKAP5 gene_id:9495|Hs108|chr14          ( 427) 2695 423.9 1.4e-118


>>CCDS9764.1 AKAP5 gene_id:9495|Hs108|chr14               (427 aa)
 initn: 2695 init1: 2695 opt: 2695  Z-score: 2242.1  bits: 423.9 E(32554): 1.4e-118
Smith-Waterman score: 2695; 99.8% identity (99.8% similar) in 427 aa overlap (1-427:1-427)

               10        20        30        40        50        60
pF1KE1 METTISEIHVENKDEKRSAEGSPGAERQKEKASMLCFKRRKKAAKALKPKAGSEAADVAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 METTISEIHVENKDEKRSAEGSPGAERQKEKASMLCFKRRKKAAKALKPKAGSEAADVAR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KCPQEAGASDQPEPTRGAWASLKRLVTRRKRSESSKQQKPLEGEMQPAINAEDADLSKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 KCPQEAGASDQPEPTRGAWASLKRLVTRRKRSESSKQQKPLEGEMQPAINAEDADLSKKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 AKSRLKIPCIKFPRGPKRSNHSKIIEDSDCSIKVQEEAEILDIQTQTPLNDQATKAKSTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 AKSRLKIPCIKFPRGPKRSNHSKIIEDSDCSIKVQEEAEILDIQTQTPLNDQATKAKSTQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DLSEGISRKDGDEVCESNVSNSITSGEKVISVELGLDNGHSAIQTGTLILEEIETIKEKQ
       :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
CCDS97 DLSEGISRKDGDEVCESNVSNSTTSGEKVISVELGLDNGHSAIQTGTLILEEIETIKEKQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 DVQPQQASPLETSETDHQQPVLSDVPPLPAIPDQQIVEEASNSTLESAPNGKDYESTEIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 DVQPQQASPLETSETDHQQPVLSDVPPLPAIPDQQIVEEASNSTLESAPNGKDYESTEIV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 AEETKPKDTELSQESDFKENGITEEKSKSEESKRMEPIAIIITDTEISEFDVTKSKNVPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 AEETKPKDTELSQESDFKENGITEEKSKSEESKRMEPIAIIITDTEISEFDVTKSKNVPK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 QFLISAENEQVGVFANDNGFEDRTSEQYETLLIETASSLVKNAIQLSIEQLVNEMASDDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 QFLISAENEQVGVFANDNGFEDRTSEQYETLLIETASSLVKNAIQLSIEQLVNEMASDDN
              370       380       390       400       410       420

              
pF1KE1 KINNLLQ
       :::::::
CCDS97 KINNLLQ
              




427 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:25:06 2016 done: Sun Nov  6 14:25:07 2016
 Total Scan time:  3.010 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]