(Circular) (Six-base) MAPSORT of: pFN21AE3965.seq Check: 1790 from: 1 to: 5701 pFN21AE3965 5701 bp With 182 enzymes: SgfI * March 28, 2012 11:53 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3511 278 Size: 53 83 186 936 1975 2468 Fragments arranged by size: 2468 1975 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3044 1937 Size: 1107 4594 Acc65I G'GTAC_C Cuts at: 3022 3022 Size: 5701 AclI AA'CG_TT Cuts at: 1563 3828 4201 1563 Size: 2265 373 3063 Fragments arranged by size: 3063 2265 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2217 2341 2718 3764 5148 5416 1632 Size: 585 124 377 1046 1384 268 1917 Fragments arranged by size: 1917 1384 1046 585 377 268 124 AfeI AGC'GCT Cuts at: 2529 2529 Size: 5701 AflII C'TTAA_G Cuts at: 820 1017 2678 820 Size: 197 1661 3843 Fragments arranged by size: 3843 1661 197 AflIII A'CryG_T Cuts at: 1203 4600 5577 1203 Size: 3397 977 1327 Fragments arranged by size: 3397 1327 977 AgeI A'CCGG_T Cuts at: 4532 4532 Size: 5701 AhdI GACnn_n'nnGTC Cuts at: 4430 4430 Size: 5701 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5701 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5701 AlwNI CAG_nnn'CTG Cuts at: 3444 5016 3444 Size: 1572 4129 ApaLI G'TGCA_C Cuts at: 3758 4914 3758 Size: 1156 4545 ApoI r'AATT_y Cuts at: 1493 2140 2562 3010 3236 3388 5497 1493 Size: 647 422 448 226 152 2109 1697 Fragments arranged by size: 2109 1697 647 448 422 226 152 AseI AT'TA_AT Cuts at: 160 1032 4255 160 Size: 872 3223 1606 Fragments arranged by size: 3223 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5701 AvaI C'yCGr_G Cuts at: 1870 1943 3026 1870 Size: 73 1083 4545 Fragments arranged by size: 4545 1083 73 BamHI G'GATC_C Cuts at: 3031 3398 3031 Size: 367 5334 BanI G'GyrC_C Cuts at: 618 943 1160 1787 3022 4477 618 Size: 325 217 627 1235 1455 1842 Fragments arranged by size: 1842 1455 1235 627 325 217 BanII G_rGCy'C Cuts at: 1391 3020 1391 Size: 1629 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2493 2999 928 Size: 971 594 506 3630 Fragments arranged by size: 3630 971 594 506 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3892 3926 1903 Size: 34 1955 34 3678 Fragments arranged by size: 3678 1955 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3593 4803 3593 Size: 1210 4491 BclI T'GATC_A Cuts at: 1548 1548 Size: 5701 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4312 136 Size: 107 122 71 631 605 2640 1525 Fragments arranged by size: 2640 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2507 5696 2507 Size: 3189 2512 BlpI GC'TnA_GC Cuts at: 3118 3118 Size: 5701 Bme1580I G_kGCm'C Cuts at: 1790 2921 3762 4918 1790 Size: 1131 841 1156 2573 Fragments arranged by size: 2573 1156 1131 841 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5701 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2149 2311 2863 Size: 416 53 83 399 24 732 162 552 Cuts at: 2863 3432 4390 442 Size: 569 958 1753 Fragments arranged by size: 1753 958 732 569 552 416 399 162 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5701 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4361 1239 Size: 3122 2579 Bpu10I CC'TnA_GC Cuts at: 2539 2539 Size: 5701 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2643 3826 4691 4989 2643 Size: 1183 865 298 3355 Fragments arranged by size: 3355 1183 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2144 4364 882 Size: 617 645 2220 2219 Fragments arranged by size: 2220 2219 645 617 BsaAI yAC'GTr Cuts at: 493 1204 3492 493 Size: 711 2288 2702 Fragments arranged by size: 2702 2288 711 BsaBI GATnn'nnATC Cuts at: 5695 5695 Size: 5701 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3508 3890 4525 275 Size: 53 83 186 936 1975 382 635 1451 Fragments arranged by size: 1975 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4134 4532 4806 4953 5364 4134 Size: 398 274 147 411 4471 Fragments arranged by size: 4471 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5476 Fragments arranged by size: 5476 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5701 BseYI C'CCAG_C Cuts at: 4904 5400 4904 Size: 496 5205 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2947 1163 Size: 573 1211 3917 Fragments arranged by size: 3917 1211 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3151 3912 4940 1540 Size: 275 186 1150 761 1028 2301 Fragments arranged by size: 2301 1150 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3762 3847 4918 3762 Size: 85 1071 4545 Fragments arranged by size: 4545 1071 85 BsmI GAATG_Cn' Cuts at: 3212 3305 3212 Size: 93 5608 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2921 3020 3762 3847 4918 1391 Size: 399 1131 99 742 85 1071 2174 Fragments arranged by size: 2174 1131 1071 742 399 99 85 BspEI T'CCGG_A Cuts at: 5364 5364 Size: 5701 BspHI T'CATG_A Cuts at: 2671 3590 5320 2671 Size: 919 1730 3052 Fragments arranged by size: 3052 1730 919 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2081 3056 844 Size: 1237 975 3489 Fragments arranged by size: 3489 1237 975 BsrBI CCG'CTC Cuts at: 1394 1823 3588 1394 Size: 429 1765 3507 Fragments arranged by size: 3507 1765 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2317 4196 4370 65 Size: 1183 1069 1879 174 1396 Fragments arranged by size: 1879 1396 1183 1069 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2090 4345 4532 1700 Size: 110 280 2255 187 2869 Fragments arranged by size: 2869 2255 280 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5701 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5701 BssSI C'ACGA_G Cuts at: 3761 4773 3761 Size: 1012 4689 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5701 BstBI TT'CG_AA Cuts at: 4505 4505 Size: 5701 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5701 BstXI CCAn_nnnn'nTGG Cuts at: 2095 2095 Size: 5701 BstYI r'GATC_y Cuts at: 1972 2507 3031 3398 3783 3800 5252 5338 5350 Size: 535 524 367 385 17 1452 86 12 Cuts at: 5350 5696 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 535 524 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2580 513 Size: 552 939 576 3634 Fragments arranged by size: 3634 939 576 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2041 487 Size: 683 56 815 4147 Fragments arranged by size: 4147 815 683 56 BtsI GCAGTG_nn' Cuts at: 2921 3217 4011 4031 2921 Size: 296 794 20 4591 Fragments arranged by size: 4591 794 296 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5701 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5666 DraI TTT'AAA Cuts at: 3005 3005 Size: 5701 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4708 809 Size: 507 3392 1802 Fragments arranged by size: 3392 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 3148 4037 5666 Size: 54 1425 50 275 18 1318 889 1629 Cuts at: 5666 8 Size: 43 Fragments arranged by size: 1629 1425 1318 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3148 1537 Size: 275 1336 4090 Fragments arranged by size: 4090 1336 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2142 2737 2802 3631 1353 Size: 789 595 65 829 3423 Fragments arranged by size: 3423 829 789 595 65 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4288 4662 4808 387 Size: 1064 138 2699 374 146 1280 Fragments arranged by size: 2699 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2217 2341 2718 3764 4361 5148 5416 Size: 393 585 124 377 1046 597 787 268 Cuts at: 5416 1239 Size: 1524 Fragments arranged by size: 1524 1046 787 597 585 393 377 268 124 EcoRI G'AATT_C Cuts at: 3010 3388 3010 Size: 378 5323 FspI TGC'GCA Cuts at: 4207 4207 Size: 5701 HaeII r_GCGC'y Cuts at: 1678 2531 4848 1678 Size: 853 2317 2531 Fragments arranged by size: 2531 2317 853 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2209 2241 4342 4374 4416 Size: 32 135 32 637 32 2101 32 42 Cuts at: 4416 4448 1373 Size: 32 2626 Fragments arranged by size: 2626 2101 637 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3045 3291 669 Size: 988 281 1107 246 3079 Fragments arranged by size: 3079 1107 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5701 HpaI GTT'AAC Cuts at: 3291 3291 Size: 5701 KpnI G_GTAC'C Cuts at: 3026 3026 Size: 5701 MfeI C'AATT_G Cuts at: 3300 3300 Size: 5701 MluI A'CGCG_T Cuts at: 5577 5577 Size: 5701 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2745 4815 4999 1305 Size: 1440 2070 184 2007 Fragments arranged by size: 2070 2007 1440 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3879 Fragments arranged by size: 3879 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2060 2884 3659 4018 4177 518 Size: 648 894 824 775 359 159 2042 Fragments arranged by size: 2042 894 824 775 648 359 159 MspA1I CmG'CkG Cuts at: 1606 3117 3794 4942 5187 1606 Size: 1511 677 1148 245 2120 Fragments arranged by size: 2120 1511 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 2580 513 Size: 552 939 576 3634 Fragments arranged by size: 3634 939 576 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5701 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5701 NotI GC'GGCC_GC Cuts at: 3148 3148 Size: 5701 NspI r_CATG'y Cuts at: 1132 1229 2298 2348 2883 3059 4604 1132 Size: 97 1069 50 535 176 1545 2229 Fragments arranged by size: 2229 1545 1069 535 176 97 50 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5701 PciI A'CATG_T Cuts at: 4600 4600 Size: 5701 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5701 PmeI GTTT'AAAC Cuts at: 3005 3005 Size: 5701 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2141 2173 3770 3802 5283 5315 2141 Size: 32 1597 32 1481 32 2527 Fragments arranged by size: 2527 1597 1481 32 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5701 PsiI TTA'TAA Cuts at: 2616 3271 2616 Size: 655 5046 PstI C_TGCA'G Cuts at: 830 2340 2630 3053 830 Size: 1510 290 423 3478 Fragments arranged by size: 3478 1510 423 290 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5701 SalI G'TCGA_C Cuts at: 1936 3043 1936 Size: 1107 4594 SbfI CC_TGCA'GG Cuts at: 3053 3053 Size: 5701 ScaI AGT'ACT Cuts at: 3949 5661 3949 Size: 1712 3989 SfcI C'TryA_G Cuts at: 826 1045 2336 2626 3049 4184 4865 5056 826 Size: 219 1291 290 423 1135 681 191 1471 Fragments arranged by size: 1471 1291 1135 681 423 290 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5701 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5701 SmaI CCC'GGG Cuts at: 1872 3028 1872 Size: 1156 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2658 2678 3805 4706 4968 820 Size: 197 926 715 20 1127 901 262 1553 Fragments arranged by size: 1553 1127 926 901 715 262 197 20 SnaBI TAC'GTA Cuts at: 493 3492 493 Size: 2999 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5701 SphI G_CATG'C Cuts at: 1132 3059 1132 Size: 1927 3774 SspI AAT'ATT Cuts at: 5 52 2634 2645 3625 5 Size: 47 2582 11 980 2081 Fragments arranged by size: 2582 2081 980 47 11 StuI AGG'CCT Cuts at: 1517 1517 Size: 5701 StyI C'CwwG_G Cuts at: 513 1065 2004 2580 3140 513 Size: 552 939 576 560 3074 Fragments arranged by size: 3074 939 576 560 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3728 3745 3898 4083 4528 325 Size: 1255 2148 17 153 185 445 1498 Fragments arranged by size: 2148 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3947 5659 96 Size: 274 80 33 51 1443 1970 1712 138 Fragments arranged by size: 1970 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5661 5693 5661 Size: 32 5669 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5701 XbaI T'CTAG_A Cuts at: 3037 3037 Size: 5701 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5701 XmaI C'CCGG_G Cuts at: 1870 3026 1870 Size: 1156 4545 XmnI GAAnn'nnTTC Cuts at: 3830 3830 Size: 5701 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3509 276 Size: 53 83 186 936 1975 2468 Fragments arranged by size: 2468 1975 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI