FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4139, 555 aa 1>>>pF1KE4139 555 - 555 aa - 555 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4032+/-0.000346; mu= 19.1272+/- 0.022 mean_var=82.2133+/-16.561, 0's: 0 Z-trim(115.5): 46 B-trim: 79 in 1/50 Lambda= 0.141450 statistics sampled from 25909 (25952) to 25909 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.304), width: 16 Scan time: 11.040 The best scores are: opt bits E(85289) NP_976046 (OMIM: 609103) F-box only protein 33 [Ho ( 555) 3692 763.3 0 XP_005250316 (OMIM: 609097) PREDICTED: F-box only ( 561) 199 50.5 1.6e-05 NP_036304 (OMIM: 609097) F-box only protein 24 iso ( 618) 199 50.6 1.8e-05 >>NP_976046 (OMIM: 609103) F-box only protein 33 [Homo s (555 aa) initn: 3692 init1: 3692 opt: 3692 Z-score: 4072.4 bits: 763.3 E(85289): 0 Smith-Waterman score: 3692; 100.0% identity (100.0% similar) in 555 aa overlap (1-555:1-555) 10 20 30 40 50 60 pF1KE4 MLLFLSVPQPRPPGARTRAGAARVARWRRLRLQQLRRLRGLLRVLRGRPGAGSRRRGRMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_976 MLLFLSVPQPRPPGARTRAGAARVARWRRLRLQQLRRLRGLLRVLRGRPGAGSRRRGRMA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 LCGQAAGAASLPSELIVHIFSFLPAPDRLRASASCSHWRECLFYPALWPQLRICLRVSPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_976 LCGQAAGAASLPSELIVHIFSFLPAPDRLRASASCSHWRECLFYPALWPQLRICLRVSPA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 EQPRLEFLMRKCGWFVRELRVEFAAENYLSGGGPGDGGGADTGTGGEEVEALQLSARWLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_976 EQPRLEFLMRKCGWFVRELRVEFAAENYLSGGGPGDGGGADTGTGGEEVEALQLSARWLE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 VLRTYLELVLCVLVSIRNNRNLQKFSLFGDISVLQQQGSLSNTYLSKVDPDGKKIKQIQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_976 VLRTYLELVLCVLVSIRNNRNLQKFSLFGDISVLQQQGSLSNTYLSKVDPDGKKIKQIQQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 LFEEILSNSRQLKWLSCGFMLEIVTPTSLSSLSNAVANTMEHLSLLDNNIPGNSTLITAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_976 LFEEILSNSRQLKWLSCGFMLEIVTPTSLSSLSNAVANTMEHLSLLDNNIPGNSTLITAV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 ELERFVNLHSLALDFCDFTAEMARVLTDSNHVPLQRLSLLVHNVSVMHKSLDNMPNDEHW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_976 ELERFVNLHSLALDFCDFTAEMARVLTDSNHVPLQRLSLLVHNVSVMHKSLDNMPNDEHW 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 KALSRKSTSFRVYIMAFDIKSEDMLKILKPSIPLERIHFDSYITCVSGAIVDLISRQYDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_976 KALSRKSTSFRVYIMAFDIKSEDMLKILKPSIPLERIHFDSYITCVSGAIVDLISRQYDK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 FLTHFILMNDVIDTSGFPDLSDNRNEDPLVLLAWRCTKLSLLAIHGYTVWAHNLIAIARL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_976 FLTHFILMNDVIDTSGFPDLSDNRNEDPLVLLAWRCTKLSLLAIHGYTVWAHNLIAIARL 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 RGSDLKVLEVTEESIDFDQGELADQDVDPVHNLIEQVSLGLGQPWHAVMDIESLSVFTEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_976 RGSDLKVLEVTEESIDFDQGELADQDVDPVHNLIEQVSLGLGQPWHAVMDIESLSVFTEP 490 500 510 520 530 540 550 pF1KE4 NRHFYREMQSFSEDI ::::::::::::::: NP_976 NRHFYREMQSFSEDI 550 >>XP_005250316 (OMIM: 609097) PREDICTED: F-box only prot (561 aa) initn: 147 init1: 60 opt: 199 Z-score: 219.9 bits: 50.5 E(85289): 1.6e-05 Smith-Waterman score: 199; 36.1% identity (59.0% similar) in 122 aa overlap (10-122:14-129) 10 20 30 40 50 pF1KE4 MLLFLSVPQPRPPGARTRAGAARVARW-RRLRLQQLRRLRGL---LRVLRGRPGAG :: .:.: :: :..: .: .::.. :: : ::: :. :. : XP_005 MVWESQQERGGQGPRRQEGRSREGAIRMVRGSQRRKLQKFTRLCGREEGLRVKRSCPSCG 10 20 30 40 50 60 60 70 80 90 100 pF1KE4 SR-----RRGRMALCGQAAGAASLPSELIVHIFSFLPAPDRLRASASCSHWRECLFYPAL :. .::. :. . .: ::. ::.::::. : . . .: ...: .. XP_005 SELGVEEKRGK----GNPISIQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGV 70 80 90 100 110 110 120 130 140 150 160 pF1KE4 WPQLRICLRVSPAEQPRLEFLMRKCGWFVRELRVEFAAENYLSGGGPGDGGGADTGTGGE : ::: :.:: : XP_005 W--RRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGY 120 130 140 150 160 170 >>NP_036304 (OMIM: 609097) F-box only protein 24 isoform (618 aa) initn: 121 init1: 60 opt: 199 Z-score: 219.4 bits: 50.6 E(85289): 1.8e-05 Smith-Waterman score: 199; 36.1% identity (59.0% similar) in 122 aa overlap (10-122:14-129) 10 20 30 40 50 pF1KE4 MLLFLSVPQPRPPGARTRAGAARVARW-RRLRLQQLRRLRGL---LRVLRGRPGAG :: .:.: :: :..: .: .::.. :: : ::: :. :. : NP_036 MVWESQQERGGQGPRRQEGRSREGAIRMVRGSQRRKLQKFTRLCGREEGLRVKRSCPSCG 10 20 30 40 50 60 60 70 80 90 100 pF1KE4 SR-----RRGRMALCGQAAGAASLPSELIVHIFSFLPAPDRLRASASCSHWRECLFYPAL :. .::. :. . .: ::. ::.::::. : . . .: ...: .. NP_036 SELGVEEKRGK----GNPISIQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGV 70 80 90 100 110 110 120 130 140 150 160 pF1KE4 WPQLRICLRVSPAEQPRLEFLMRKCGWFVRELRVEFAAENYLSGGGPGDGGGADTGTGGE : ::: :.:: : NP_036 W--RRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGY 120 130 140 150 160 170 555 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:41:03 2016 done: Sat Nov 5 22:41:05 2016 Total Scan time: 11.040 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]