FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4139, 555 aa
  1>>>pF1KE4139 555 - 555 aa - 555 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6576+/-0.000822; mu= 17.8257+/- 0.050
 mean_var=84.0581+/-16.972, 0's: 0 Z-trim(108.9): 27  B-trim: 0 in 0/50
 Lambda= 0.139889
 statistics sampled from 10496 (10515) to 10496 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.323), width:  16
 Scan time:  3.720

The best scores are:                                      opt bits E(32554)
CCDS9677.1 FBXO33 gene_id:254170|Hs108|chr14       ( 555) 3692 755.0 5.3e-218


>>CCDS9677.1 FBXO33 gene_id:254170|Hs108|chr14            (555 aa)
 initn: 3692 init1: 3692 opt: 3692  Z-score: 4027.3  bits: 755.0 E(32554): 5.3e-218
Smith-Waterman score: 3692; 100.0% identity (100.0% similar) in 555 aa overlap (1-555:1-555)

               10        20        30        40        50        60
pF1KE4 MLLFLSVPQPRPPGARTRAGAARVARWRRLRLQQLRRLRGLLRVLRGRPGAGSRRRGRMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MLLFLSVPQPRPPGARTRAGAARVARWRRLRLQQLRRLRGLLRVLRGRPGAGSRRRGRMA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LCGQAAGAASLPSELIVHIFSFLPAPDRLRASASCSHWRECLFYPALWPQLRICLRVSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LCGQAAGAASLPSELIVHIFSFLPAPDRLRASASCSHWRECLFYPALWPQLRICLRVSPA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 EQPRLEFLMRKCGWFVRELRVEFAAENYLSGGGPGDGGGADTGTGGEEVEALQLSARWLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 EQPRLEFLMRKCGWFVRELRVEFAAENYLSGGGPGDGGGADTGTGGEEVEALQLSARWLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 VLRTYLELVLCVLVSIRNNRNLQKFSLFGDISVLQQQGSLSNTYLSKVDPDGKKIKQIQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 VLRTYLELVLCVLVSIRNNRNLQKFSLFGDISVLQQQGSLSNTYLSKVDPDGKKIKQIQQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 LFEEILSNSRQLKWLSCGFMLEIVTPTSLSSLSNAVANTMEHLSLLDNNIPGNSTLITAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LFEEILSNSRQLKWLSCGFMLEIVTPTSLSSLSNAVANTMEHLSLLDNNIPGNSTLITAV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 ELERFVNLHSLALDFCDFTAEMARVLTDSNHVPLQRLSLLVHNVSVMHKSLDNMPNDEHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ELERFVNLHSLALDFCDFTAEMARVLTDSNHVPLQRLSLLVHNVSVMHKSLDNMPNDEHW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 KALSRKSTSFRVYIMAFDIKSEDMLKILKPSIPLERIHFDSYITCVSGAIVDLISRQYDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 KALSRKSTSFRVYIMAFDIKSEDMLKILKPSIPLERIHFDSYITCVSGAIVDLISRQYDK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 FLTHFILMNDVIDTSGFPDLSDNRNEDPLVLLAWRCTKLSLLAIHGYTVWAHNLIAIARL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 FLTHFILMNDVIDTSGFPDLSDNRNEDPLVLLAWRCTKLSLLAIHGYTVWAHNLIAIARL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 RGSDLKVLEVTEESIDFDQGELADQDVDPVHNLIEQVSLGLGQPWHAVMDIESLSVFTEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 RGSDLKVLEVTEESIDFDQGELADQDVDPVHNLIEQVSLGLGQPWHAVMDIESLSVFTEP
              490       500       510       520       530       540

              550     
pF1KE4 NRHFYREMQSFSEDI
       :::::::::::::::
CCDS96 NRHFYREMQSFSEDI
              550     




555 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:41:02 2016 done: Sat Nov  5 22:41:03 2016
 Total Scan time:  3.720 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]