FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8906, 239 aa 1>>>pF1KB8906 239 - 239 aa - 239 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8665+/-0.000263; mu= 11.6322+/- 0.017 mean_var=184.6458+/-36.785, 0's: 0 Z-trim(125.5): 216 B-trim: 0 in 0/59 Lambda= 0.094385 statistics sampled from 49234 (49496) to 49234 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.58), width: 16 Scan time: 7.710 The best scores are: opt bits E(85289) NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8 ( 239) 1647 235.0 8.9e-62 NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4 ( 354) 450 72.2 1.3e-12 XP_006723629 (OMIM: 604612) PREDICTED: homeobox pr ( 202) 436 70.0 3.5e-12 NP_002500 (OMIM: 604612) homeobox protein Nkx-2.2 ( 273) 436 70.2 4.2e-12 NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324) 433 69.8 6.3e-12 NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 ( 364) 424 68.7 1.6e-11 NP_003308 (OMIM: 118700,188550,600635,610978) home ( 371) 358 59.7 8.1e-09 NP_001073136 (OMIM: 118700,188550,600635,610978) h ( 401) 358 59.7 8.6e-09 NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 322 54.7 2.1e-07 NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159) 294 50.5 2e-06 NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 ( 234) 294 50.7 2.5e-06 NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 287 50.0 6.4e-06 NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333) 280 49.0 1.2e-05 NP_001269359 (OMIM: 607164) transcription factor L ( 198) 270 47.4 2.2e-05 NP_004396 (OMIM: 126255) homeobox protein DLX-2 [H ( 328) 266 47.1 4.4e-05 NP_006553 (OMIM: 604255) transcription factor LBX1 ( 281) 262 46.5 5.9e-05 NP_057254 (OMIM: 604240) T-cell leukemia homeobox ( 284) 261 46.3 6.5e-05 NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 261 46.5 7.5e-05 NP_001009812 (OMIM: 607164) transcription factor L ( 194) 246 44.1 0.00021 XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 247 44.4 0.00024 NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 247 44.4 0.00024 NP_001091639 (OMIM: 611074) brain-specific homeobo ( 233) 244 43.9 0.00028 NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348) 245 44.3 0.00034 NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 244 44.1 0.00037 NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 241 43.7 0.00045 NP_064447 (OMIM: 605212) barH-like 2 homeobox prot ( 387) 242 43.9 0.00048 XP_016879780 (OMIM: 601911,616788) PREDICTED: home ( 168) 236 42.7 0.00049 NP_001925 (OMIM: 601911,616788) homeobox protein D ( 168) 236 42.7 0.00049 NP_835221 (OMIM: 600029) homeobox protein DLX-1 is ( 255) 238 43.2 0.00053 NP_067545 (OMIM: 603260) homeobox protein BarH-lik ( 254) 235 42.7 0.0007 NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 239 43.7 0.00081 NP_612138 (OMIM: 601911,616788) homeobox protein D ( 240) 232 42.3 0.0009 XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342) 234 42.8 0.00094 NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327) 232 42.5 0.0011 NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 231 42.3 0.0011 NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 231 42.4 0.0013 NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 231 42.4 0.0013 XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 231 42.4 0.0013 NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 228 41.8 0.0014 XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 231 42.5 0.0014 XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 231 42.5 0.0014 XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 231 42.5 0.0014 XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 231 42.5 0.0014 NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 231 42.5 0.0014 XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 231 42.5 0.0014 XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 231 42.5 0.0014 NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 227 41.7 0.0015 NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 227 41.7 0.0015 XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 231 42.5 0.0016 NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 227 41.7 0.0016 >>NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8 [Hom (239 aa) initn: 1647 init1: 1647 opt: 1647 Z-score: 1230.1 bits: 235.0 E(85289): 8.9e-62 Smith-Waterman score: 1647; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239) 10 20 30 40 50 60 pF1KB8 MATSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 MATSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 TSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 TSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 LRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 LRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQP 130 140 150 160 170 180 190 200 210 220 230 pF1KB8 CGGGGGGEVGTAAAQEKCGAPPAAACPLPGYPAFGPGSALGLFPAYQHLASPALVSWNW ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 CGGGGGGEVGTAAAQEKCGAPPAAACPLPGYPAFGPGSALGLFPAYQHLASPALVSWNW 190 200 210 220 230 >>NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4 [Hom (354 aa) initn: 449 init1: 338 opt: 450 Z-score: 347.2 bits: 72.2 E(85289): 1.3e-12 Smith-Waterman score: 450; 51.7% identity (73.2% similar) in 149 aa overlap (81-225:186-334) 60 70 80 90 100 110 pF1KB8 YPSSDESSLETSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLS : :.:::::::.::. ::::::.::.::: NP_149 AGVNVAGMGSLTGIADAAKSLGPLHAAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLS 160 170 180 190 200 210 120 130 140 150 160 pF1KB8 APEREQLASLLRLTPTQVKIWFQNHRYKLKR-ARAPGAAESPDLAASAELHAAPGLLRRV :::::.:::...::::::::::::::::.:: :. .: . . .. . : ::: NP_149 APEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGGLGPPPPPPPSPRRV 220 230 240 250 260 270 170 180 190 200 210 220 pF1KB8 VVPVLVRDGQPCGGGGGGEV-GTAAAQEKCGAPPAAACPL-PGYPAF-GPGSALGLFPAY .:::::.::.:: .:.. . : :. : .: : :. ::. :::..:. . : NP_149 AVPVLVKDGKPCQNGASTPTPGQAGPQPPAPTPAPELEELSPSPPALHGPGGGLAALDAA 280 290 300 310 320 330 230 pF1KB8 QHLASPALVSWNW NP_149 AGEYSGGVLGANLLYGRTW 340 350 >>XP_006723629 (OMIM: 604612) PREDICTED: homeobox protei (202 aa) initn: 545 init1: 388 opt: 436 Z-score: 339.7 bits: 70.0 E(85289): 3.5e-12 Smith-Waterman score: 508; 49.5% identity (67.5% similar) in 194 aa overlap (52-239:24-202) 30 40 50 60 70 pF1KB8 AQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLETSPPDSSQRPSARPASPGS-- : .: :: .. :.... :. .::. XP_006 MIFSATSPPKFSPTLLHGLAAGAPPQDSSS-KSPEPSADESPDNDKETPGGGG 10 20 30 40 50 80 90 100 110 120 130 pF1KB8 DAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKL :: :..::::::::::: ::::::::::::::::::.::::.:::::::::::::::::. XP_006 DAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKM 60 70 80 90 100 110 140 150 160 170 180 190 pF1KB8 KRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCG ::::: . : : . : :::.::::::::.:: . . .. ::: . : XP_006 KRARAEKGMEVTPLPS-------P---RRVAVPVLVRDGKPCHALKAQDL--AAATFQAG 120 130 140 150 160 200 210 220 230 pF1KB8 APPAA--ACPLPG--YPAFGPGSALGLFPAYQHLASPALVSWNW : .: : : : : ... .:. . :.. .:.: XP_006 IPFSAYSAQSLQHMQYNAQYSSASTPQYPTAHPLVQAQ--QWTW 170 180 190 200 >>NP_002500 (OMIM: 604612) homeobox protein Nkx-2.2 [Hom (273 aa) initn: 557 init1: 388 opt: 436 Z-score: 338.2 bits: 70.2 E(85289): 4.2e-12 Smith-Waterman score: 526; 45.8% identity (63.6% similar) in 236 aa overlap (21-239:54-273) 10 20 30 40 pF1KB8 MATSGRLSFTVRSLLDLPEQDA-QHLPRREPEPRAPQPDPCAAWLDSERG :: : :: ..: . .: . :: : .: NP_002 EEGSVAEGPEEENEGPEPAKRAGPLGQGALDAVQSLPLKNPF-YDSSDNPYTRWLASTEG 30 40 50 60 70 80 50 60 70 80 90 pF1KB8 -HY---------PSSDESSLETSPPDSSQRPSARPASPGS--DAEKRKKRRVLFSKAQTL .: : .: :: .. :.... :. .::. :: :..::::::::::: NP_002 LQYSLHGLAAGAPPQDSSS-KSPEPSADESPDNDKETPGGGGDAGKKRKRRVLFSKAQTY 90 100 110 120 130 140 100 110 120 130 140 150 pF1KB8 ELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASA ::::::::::::::::::.::::.:::::::::::::::::.::::: . : : . NP_002 ELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGMEVTPLPS-- 150 160 170 180 190 160 170 180 190 200 210 pF1KB8 ELHAAPGLLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCGAPPAA--ACPLPG--YPA : :::.::::::::.:: . . .. ::: . : : .: : : : : NP_002 -----P---RRVAVPVLVRDGKPCHALKAQDL--AAATFQAGIPFSAYSAQSLQHMQYNA 200 210 220 230 240 220 230 pF1KB8 FGPGSALGLFPAYQHLASPALVSWNW ... .:. . :.. .:.: NP_002 QYSSASTPQYPTAHPLVQAQ--QWTW 250 260 270 >>NP_004378 (OMIM: 108900,187500,217095,225250,600584,61 (324 aa) initn: 470 init1: 318 opt: 433 Z-score: 335.1 bits: 69.8 E(85289): 6.3e-12 Smith-Waterman score: 480; 41.0% identity (55.4% similar) in 249 aa overlap (18-238:59-289) 10 20 30 40 pF1KB8 MATSGRLSFTVRSLLDLPEQDAQHLPRREPE-PRAPQPDPCAAWLDS :: : ::. . : :::.: ::. . . NP_004 AAGELSARLEATLAPSSCMLAAFKPEAYAGPEAAAPGLPELRAELGRAPSPAKCASAFPA 30 40 50 60 70 80 50 60 70 80 pF1KB8 ERGHYPS--SDESS-------------------LETSPPDSSQRPSARPASPGSDAEKRK . :: :: . :: . :...:: :: .:. NP_004 APAFYPRAYSDPDPAKDPRAEKKELCALQKAVELEKTEADNAERPRAR---------RRR 90 100 110 120 130 90 100 110 120 130 140 pF1KB8 KRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAP : :::::.::. ::::::.::::::::::.::::.:.:: :::::::::.::: :: : NP_004 KPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQD 140 150 160 170 180 190 150 160 170 180 190 200 pF1KB8 GAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCGAPPAAA . : : : ::..::::::::.:: : . . : : : . NP_004 QTLELVGLPPP-----PPPPARRIAVPVLVRDGKPCLG----DSAPYAPAYGVGLNPYGY 200 210 220 230 240 250 210 220 230 pF1KB8 CPLPGYPAFG-----PG-SALGLFPAYQHLASPALVSWNW :.::..: :: : . .:: :.:: .. : NP_004 NAYPAYPGYGGAACSPGYSCTAAYPAGPSPAQPATAAANNNFVNFGVGDLNAVQSPGIPQ 260 270 280 290 300 310 NP_004 SNSGVSTLHGIRAW 320 >>NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 [Hom (364 aa) initn: 502 init1: 307 opt: 424 Z-score: 327.9 bits: 68.7 E(85289): 1.6e-11 Smith-Waterman score: 443; 47.4% identity (66.1% similar) in 192 aa overlap (31-219:103-270) 10 20 30 40 50 60 pF1KB8 MATSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLE ::. . .: .. .:.. . ..::: NP_660 LNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVV---RDRSQKSCQLKKSLE 80 90 100 110 120 70 80 90 100 110 120 pF1KB8 TSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASL :. .. . : :: .: : :.: :::::.::..::::::.:::::::::::.::: NP_660 TAGDCKAAEESERP-KPRS----RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASS 130 140 150 160 170 180 130 140 150 160 170 180 pF1KB8 LRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQP :.:: :::::::::.::: :: : .: .:.: :: : :::.::::::::.: NP_660 LKLTSTQVKIWFQNRRYKCKRQRQD---KSLELGA----HAPPPPPRRVAVPVLVRDGKP 190 200 210 220 230 190 200 210 220 230 pF1KB8 CGGGGGGEVGTAAAQEKCGAP---PAAACPLPGYPAFGPGSALGLFPAYQHLASPALVSW : : .:: ::: :.: ..::.: :.. NP_660 CV--------TPSAQAY-GAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYS 240 250 260 270 280 pF1KB8 NW NP_660 SSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSGGSAQPLHQGTA 290 300 310 320 330 340 >>NP_003308 (OMIM: 118700,188550,600635,610978) homeobox (371 aa) initn: 479 init1: 325 opt: 358 Z-score: 279.2 bits: 59.7 E(85289): 8.1e-09 Smith-Waterman score: 446; 39.0% identity (58.3% similar) in 264 aa overlap (2-233:82-338) 10 20 30 pF1KB8 MATSGRLSFTVRSLLDLPE-QDAQHLPRREP :..: . .. .. .:: ::... : NP_003 AMQQHAVGHHGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGP 60 70 80 90 100 110 40 50 60 70 80 pF1KB8 EPRAPQPDPCAAWLDSERGHYPSSDESSLET--SPPDSSQRPSARPASPGSDAEKRKKRR . .::: .. : . . :.. : : :. . :..: :.::: NP_003 GWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAP------RRKRR 120 130 140 150 160 90 100 110 120 130 140 pF1KB8 VLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAPGAA ::::.::. ::::::.::.::::::::.:::...::::::::::::::::.:: :: NP_003 VLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAA 170 180 190 200 210 220 150 160 170 180 190 pF1KB8 ESPDLAASA------------ELHAAPGLLRRVVVPVLVRDGQPCGGG----GGGEV-GT .. :. . .: :::.:::::.::.:: .: :.. . : NP_003 QQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGH 230 240 250 260 270 280 200 210 220 230 pF1KB8 AA--AQEKCGAPPAAACP---------LPGYPAFGPGSALGLFPAY-QHLASPALVSWNW : ::.. : ::: : ..:. :::: : : .: :::: NP_003 AQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSA-GQSPDLAHHAASPAALQGQV 290 300 310 320 330 340 NP_003 SSLSHLNSSGSDYGTMSCSTLLYGRTW 350 360 370 >>NP_001073136 (OMIM: 118700,188550,600635,610978) homeo (401 aa) initn: 479 init1: 325 opt: 358 Z-score: 278.9 bits: 59.7 E(85289): 8.6e-09 Smith-Waterman score: 446; 39.0% identity (58.3% similar) in 264 aa overlap (2-233:112-368) 10 20 30 pF1KB8 MATSGRLSFTVRSLLDLPE-QDAQHLPRREP :..: . .. .. .:: ::... : NP_001 AMQQHAVGHHGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGP 90 100 110 120 130 140 40 50 60 70 80 pF1KB8 EPRAPQPDPCAAWLDSERGHYPSSDESSLET--SPPDSSQRPSARPASPGSDAEKRKKRR . .::: .. : . . :.. : : :. . :..: :.::: NP_001 GWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAP------RRKRR 150 160 170 180 190 90 100 110 120 130 140 pF1KB8 VLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAPGAA ::::.::. ::::::.::.::::::::.:::...::::::::::::::::.:: :: NP_001 VLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAA 200 210 220 230 240 250 150 160 170 180 190 pF1KB8 ESPDLAASA------------ELHAAPGLLRRVVVPVLVRDGQPCGGG----GGGEV-GT .. :. . .: :::.:::::.::.:: .: :.. . : NP_001 QQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGH 260 270 280 290 300 310 200 210 220 230 pF1KB8 AA--AQEKCGAPPAAACP---------LPGYPAFGPGSALGLFPAY-QHLASPALVSWNW : ::.. : ::: : ..:. :::: : : .: :::: NP_001 AQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSA-GQSPDLAHHAASPAALQGQV 320 330 340 350 360 370 NP_001 SSLSHLNSSGSDYGTMSCSTLLYGRTW 380 390 400 >>NP_001129743 (OMIM: 217095,611770) homeobox protein Nk (301 aa) initn: 420 init1: 289 opt: 322 Z-score: 253.8 bits: 54.7 E(85289): 2.1e-07 Smith-Waterman score: 430; 43.3% identity (58.1% similar) in 203 aa overlap (28-217:65-255) 10 20 30 40 50 pF1KB8 MATSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWL--DSERGHYPSSD :. . : :: : : :.:: :. NP_001 RKSPENFQYLRMDAEPRGSEVHNAGGGGGDRKLDGSEPPGGPCEAVLEMDAERMGEPQPG 40 50 60 70 80 90 60 70 80 90 100 pF1KB8 ESSLETSPPDSSQRPSARPASPGSD-----------AEKRKKRRVLFSKAQTLELERRFR .. .:: .. : : .. ..: :..:.: :::::.::.: :::::. NP_001 LNA--ASPLGGGTRVPERGVGNSGDSVRGGRSEQPKARQRRKPRVLFSQAQVLALERRFK 100 110 120 130 140 150 110 120 130 140 150 160 pF1KB8 QQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPG :::::::::::.::: :.:: :::::::::.::: :: : : :: . : NP_001 QQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQD---------KSLELAGHPL 160 170 180 190 200 170 180 190 200 210 220 pF1KB8 LLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCGAPPAAACPLPGYPAFGPGSALGLFP :::.::::::::.:: : : : . . .: . : : .: : NP_001 TPRRVAVPVLVRDGKPCLGPGPGAPAFPSPYSAAVSPYSCYGGYSGAP-YGAGYGTCYAG 210 220 230 240 250 260 230 pF1KB8 AYQHLASPALVSWNW NP_001 APSGPAPHTPLASAGFGHGGQNATPQGHLAATLQGVRAW 270 280 290 300 >>NP_001243268 (OMIM: 602041) homeobox protein Nkx-3.1 i (159 aa) initn: 295 init1: 274 opt: 294 Z-score: 236.4 bits: 50.5 E(85289): 2e-06 Smith-Waterman score: 294; 42.6% identity (63.6% similar) in 129 aa overlap (33-161:3-124) 10 20 30 40 50 60 pF1KB8 TSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLETS :.:.: : : .: . : : . NP_001 MLRVPEPRPGEAETLAE-----TEPERHLGSY 10 20 70 80 90 100 110 120 pF1KB8 PPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLR :: . .: : : . . .:. :. ::..:..::::.: .:.::::::: .::. :. NP_001 LLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLK 30 40 50 60 70 80 130 140 150 160 170 180 pF1KB8 LTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQPCG :: :::::::::.::: :: . ..: :: . : : NP_001 LTETQVKIWFQNRRYKTKRKQL--SSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYY 90 100 110 120 130 140 190 200 210 220 230 pF1KB8 GGGGGEVGTAAAQEKCGAPPAAACPLPGYPAFGPGSALGLFPAYQHLASPALVSWNW NP_001 PYLYCVGSWSPAFW 150 239 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:37:18 2016 done: Tue Nov 8 04:37:20 2016 Total Scan time: 7.710 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]