FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5637, 504 aa 1>>>pF1KE5637 504 - 504 aa - 504 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2991+/-0.000481; mu= 19.2853+/- 0.030 mean_var=76.5690+/-15.715, 0's: 0 Z-trim(109.6): 22 B-trim: 897 in 1/50 Lambda= 0.146571 statistics sampled from 17815 (17823) to 17815 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.554), E-opt: 0.2 (0.209), width: 16 Scan time: 7.310 The best scores are: opt bits E(85289) XP_011535408 (OMIM: 604857) PREDICTED: signal reco ( 504) 3269 701.2 1.7e-201 NP_003127 (OMIM: 604857) signal recognition partic ( 504) 3269 701.2 1.7e-201 NP_001139754 (OMIM: 604857) signal recognition par ( 455) 2938 631.2 1.9e-180 XP_016877104 (OMIM: 604857) PREDICTED: signal reco ( 400) 2633 566.7 4.4e-161 XP_005268081 (OMIM: 604857) PREDICTED: signal reco ( 447) 2491 536.7 5.3e-152 >>XP_011535408 (OMIM: 604857) PREDICTED: signal recognit (504 aa) initn: 3269 init1: 3269 opt: 3269 Z-score: 3738.3 bits: 701.2 E(85289): 1.7e-201 Smith-Waterman score: 3269; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504) 10 20 30 40 50 60 pF1KE5 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL 430 440 450 460 470 480 490 500 pF1KE5 QSMMRQFQQGAAGNMKGMMGFNNM :::::::::::::::::::::::: XP_011 QSMMRQFQQGAAGNMKGMMGFNNM 490 500 >>NP_003127 (OMIM: 604857) signal recognition particle 5 (504 aa) initn: 3269 init1: 3269 opt: 3269 Z-score: 3738.3 bits: 701.2 E(85289): 1.7e-201 Smith-Waterman score: 3269; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504) 10 20 30 40 50 60 pF1KE5 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL 430 440 450 460 470 480 490 500 pF1KE5 QSMMRQFQQGAAGNMKGMMGFNNM :::::::::::::::::::::::: NP_003 QSMMRQFQQGAAGNMKGMMGFNNM 490 500 >>NP_001139754 (OMIM: 604857) signal recognition particl (455 aa) initn: 2938 init1: 2938 opt: 2938 Z-score: 3360.7 bits: 631.2 E(85289): 1.9e-180 Smith-Waterman score: 2938; 99.8% identity (100.0% similar) in 448 aa overlap (57-504:8-455) 30 40 50 60 70 80 pF1KE5 VLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKL .::::::::::::::::::::::::::::: NP_001 MPPLSMKRSAIDLEEMASGLNKRKMIQHAVFKELVKL 10 20 30 90 100 110 120 130 140 pF1KE5 VDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFD 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE5 QLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEML 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE5 QVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAAT 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE5 KSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQ 220 230 240 250 260 270 330 340 350 360 370 380 pF1KE5 FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQE 280 290 300 310 320 330 390 400 410 420 430 440 pF1KE5 LDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDM 340 350 360 370 380 390 450 460 470 480 490 500 pF1KE5 SKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGNMKGMMGFNNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGNMKGMMGFNNM 400 410 420 430 440 450 >>XP_016877104 (OMIM: 604857) PREDICTED: signal recognit (400 aa) initn: 2633 init1: 2633 opt: 2633 Z-score: 3012.9 bits: 566.7 E(85289): 4.4e-161 Smith-Waterman score: 2633; 100.0% identity (100.0% similar) in 400 aa overlap (105-504:1-400) 80 90 100 110 120 130 pF1KE5 IQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCL :::::::::::::::::::::::::::::: XP_016 MFVGLQGSGKTTTCSKLAYYYQRKGWKTCL 10 20 30 140 150 160 170 180 190 pF1KE5 ICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGR 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE5 HKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHA 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE5 KGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDD 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE5 NEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKK 220 230 240 250 260 270 380 390 400 410 420 430 pF1KE5 LMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKM 280 290 300 310 320 330 440 450 460 470 480 490 pF1KE5 GGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGN 340 350 360 370 380 390 500 pF1KE5 MKGMMGFNNM :::::::::: XP_016 MKGMMGFNNM 400 >>XP_005268081 (OMIM: 604857) PREDICTED: signal recognit (447 aa) initn: 2508 init1: 2482 opt: 2491 Z-score: 2849.9 bits: 536.7 E(85289): 5.3e-152 Smith-Waterman score: 2782; 88.7% identity (88.7% similar) in 504 aa overlap (1-504:1-447) 10 20 30 40 50 60 pF1KE5 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL ::::::::::::::::::::::::: XP_005 SKGNEQESMARLKKLMTIMDSMNDQ----------------------------------- 370 380 430 440 450 460 470 480 pF1KE5 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL :::::::::::::::::::::::::::::::::::::: XP_005 ----------------------GGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL 390 400 410 420 490 500 pF1KE5 QSMMRQFQQGAAGNMKGMMGFNNM :::::::::::::::::::::::: XP_005 QSMMRQFQQGAAGNMKGMMGFNNM 430 440 504 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:25:12 2016 done: Tue Nov 8 05:25:13 2016 Total Scan time: 7.310 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]